PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G06090.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 321aa    MW: 33718.2 Da    PI: 4.691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G06090.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1891141155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y GVr+++ +g+W+AeIrdp+e     r++lg+f tae Aa a++aa++ l+g
  OGLUM03G06090.1  91 SKYWGVRRRP-WGKWAAEIRDPVE---GVRVWLGTFATAEAAAHAYDAAARDLRG 141
                      79********.**********866...3************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MCGGAILANI IPATPPRRAT AAHVWPGGDG EKRRKVGGGG CDDDFEAAFE RFGREDSEME  60
EEEVEEVVVG KKAAVRRRRA APAAGRRARP SKYWGVRRRP WGKWAAEIRD PVEGVRVWLG  120
TFATAEAAAH AYDAAARDLR GATAKLNFPS SSSSTAATPR PRKCRPTTAT ATPKATTPNV  180
VVVVNLVDEE AEASESSGAS SSALPDFSWQ GMSASSDDDA AAQQALLDAA GGAKKRPRSE  240
PHVTSDDEVL PASFDSDNNT AAAGLLPLDD PFLFGDQFGD LNGGAFASLM DGLFAAGEAN  300
VAGESVGLWS FGDDGLNASY Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-18ERF family protein