PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G04480.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 379aa    MW: 43618.6 Da    PI: 9.2388
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G04480.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind91.87.8e-29381482101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEEE CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFkh 83 
                      Fl+k+++++ d++++ ++sw + g+sfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+Y   +++  +k+s +            +++ weF++
  OGLUM03G04480.1  38 FLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYFLVRTNYLNKRS-HfyslrfqgfrkiDPDRWEFAN 130
                      9**********************************************************888888777664.358888877765449******* PP

                      SXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  84 ksFkkgkkellekikrkk 101
                      + F +g+++ll+ ikr++
  OGLUM03G04480.1 131 DGFLRGQRHLLKMIKRRR 148
                      ****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MEKMMPGMVK EEWPPSSPEE GEAPRPMEGL HEVGPPPFLT KTFDLVADPA TDGVVSWGRA  60
GSSFVVWDPH VFAAVLLPRF FKHNNFSSFV RQLNTYFLVR TNYLNKRSHF YSLRFQGFRK  120
IDPDRWEFAN DGFLRGQRHL LKMIKRRRPL SYLPGSQQAL GTCLEVGQFG LDEEIDRLKR  180
GKNILLAEVV KLRHEQQSTK ANMRAMEERL QHAEQKQVQM MGFLARAMQN PDFFHQLIHQ  240
QDKMKGLEDT FSKKRTRSID IVPFLNPGEV SQGDQLKSTL LFDPRPFAEL NDETAKSELE  300
NLALNIQGLG KGKQDVNRTR NQPRNQASNE TELTDDFWEE LLNEGARDDA GIPGMERRRP  360
RYVDALAQKL GYLSNSSQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141147LKMIKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-97HSF family protein