PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM03G02370.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 271aa    MW: 28999.5 Da    PI: 6.8437
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM03G02370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.93.8e-20188221134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C+tt+Tp+WR gpdg++tLCnaCG++yr  +
  OGLUM03G02370.1 188 CGHCQTTETPQWRVGPDGPSTLCNACGIRYRMDH 221
                      9******************************876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MRKPTPYVSL HDVVAFDFVD GDVPFDDLVD GEGLCCPDDP FEEVMRCLSA VDDPFLAAFK  60
LDCSPPTPAA DADVDSRSEE HMHADVGGGL DLQRAVGGGD EKAGTPSTID DVPWLQASAV  120
ARKPRRAPAA VRKRVWSLVS PQLATAAAAA VDNSRDEVSS GGGGGGEGGE HCSRPAKRRR  180
KCGEEKRCGH CQTTETPQWR VGPDGPSTLC NACGIRYRMD HLLPEYRPST SPGFGSDGYS  240
NRHRKVVKLR EKKRKKAMLA ATATALTSGP V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-18GATA family protein