PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G38800.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 195aa MW: 20432.8 Da PI: 5.0201

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G38800.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H OGLUM02G38800.1 47 YNCTFCRRGFPTAQALGGHMNVH 69 89*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MSQETSKDEV IGGRSPSGDG DKAEEELREA RSGDDDDDDE AGTRQPYNCT FCRRGFPTAQ 60 ALGGHMNVHR KDRVGRATPS SSSSTTAAAA RRSVSYDTLV RLFRPPASGG SEDAAASTAA 120 GGGGSLRSRN AEPAPQELRL FGRGAGRREE GGGRDRRDRY GCCSKDGDGN GGHDHGEEEE 180 LDLELRLGGS GSAGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	7e-12	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G38800.1