PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G37730.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 418aa    MW: 43831.3 Da    PI: 5.626
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G37730.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.2e-18335368134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  OGLUM02G37730.1 335 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 368
                      *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MAGVGFVEDM LREQSLLEAT CGDLFDHIDD LLDFPKEESA ADVLLLDAPA PGSPLSSRII  60
GGHATMAAAP PPPPQMMALP PPPAPAKDDA SALFDAAGAL GAEVFDRKDA HIGPCDELDM  120
DMAQLEWLSG LFDDGTIPHE PSFPGVNCAA PIKASALTAN AGVVLPDKAE EALFRSSSPI  180
SVLEHSGFNV ATNGGSSSSS SSSASSSSES FSGSGRAWSA PVSPRPEPPV LVIPARARSK  240
RSRPSAFPAV RGAPAATETT ILVPTPMYSS TSSHSDPESI AESNPHPPPM KKKKKAKKPA  300
APAAASDAEA DADAADADYE EGGALALPPG TVRRCTHCQI EKTPQWRAGP LGPKTLCNAC  360
GVRYKSGRLF PEYRPAASPT FMPSIHSNSH KKVVEMRQKA TRTADPSCDL LQYIRRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-36GATA family protein