PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G35690.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 394aa MW: 43190 Da PI: 7.6116

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G35690.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.9	9.6e-25	90	133	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CE+H+hrg++rsrk++e OGLUM02G35690.1 90 DPEPGRCRRTDGKKWRCSKEAYPDSKYCEKHMHRGKNRSRKPVE 133 79***************************************998 PP
2	QLQ	59.6	8.9e-21	18	53	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKy+a++ P+P++L++++++ OGLUM02G35690.1 18 PFTASQWQELEHQALIYKYMASGTPIPSDLILPLRR 53 9********************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MMMMSGRPSG GAGGGRYPFT ASQWQELEHQ ALIYKYMASG TPIPSDLILP LRRSFLLDSA 60 LATSPSLAFP PQPSLGWGCF GMGFGRKAED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH 120 MHRGKNRSRK PVEMSLATPP PPSSSATSAA SNTSAGVAPT TTTTSSPAPS YSRPAPHDAA 180 PYQALYGGPY AAATARTPAA AAYHAQVSPF HLHLDTTHPH PPPSYYSMDH KEYAYGHATK 240 EVHGEHAFFS DGTEREHHHA AAGHGQWQFK QLGMEPKQST TPLFPGAGYG HTAASPYAID 300 LSKEDDDEKE RRQQQQQQHC FLLGADLRLE KPAGHDHAAA AQKPLRHFFD EWPHEKNSKG 360 SWMGLEGETQ LSMSIPMAAN DLPITTTSRY HNDD

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MMMMSGRPSG GAGGGRYPFT ASQWQELEHQ ALIYKYMASG TPIPSDLILP LRRSFLLDSA  60
LATSPSLAFP PQPSLGWGCF GMGFGRKAED PEPGRCRRTD GKKWRCSKEA YPDSKYCEKH  120
MHRGKNRSRK PVEMSLATPP PPSSSATSAA SNTSAGVAPT TTTTSSPAPS YSRPAPHDAA  180
PYQALYGGPY AAATARTPAA AAYHAQVSPF HLHLDTTHPH PPPSYYSMDH KEYAYGHATK  240
EVHGEHAFFS DGTEREHHHA AAGHGQWQFK QLGMEPKQST TPLFPGAGYG HTAASPYAID  300
LSKEDDDEKE RRQQQQQQHC FLLGADLRLE KPAGHDHAAA AQKPLRHFFD EWPHEKNSKG  360
SWMGLEGETQ LSMSIPMAAN DLPITTTSRY HNDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-51	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G35690.1