PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G34940.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 244aa    MW: 27498.5 Da    PI: 8.1483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G34940.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-18449147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l+++v+++G+++W++Ia++++ gR++k+c++rw++ 
  OGLUM02G34940.1  4 RGHWRPSEDEKLKELVARYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49
                     899*****************************.***********996 PP
2Myb_DNA-binding54.13.6e-175699146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     r ++T+eE+ell+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  OGLUM02G34940.1 56 RSPFTEEEEELLLASHRAHGNR-WAVIARLFP-GRTDNAVKNHWHV 99
                     789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MCTRGHWRPS EDEKLKELVA RYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFT  60
EEEEELLLAS HRAHGNRWAV IARLFPGRTD NAVKNHWHVI MARRCRERMR LSNRRGGAAA  120
GAAKGDESPA RISNGEKTTT RPPATNGSGM AMASLLDKYR RECGAAGLFA IGRHHNSKED  180
YCSSTNEDTS KSVEFYDFLQ VNASSSDTKC GSSIEEQEDN RDDDQAEGQV QLIDFMEVGT  240
TTRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-74MYB family protein