PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G34080.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 1348aa MW: 151123 Da PI: 8.2936

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G34080.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.3	3.3e-19	1173	1263	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tp dv+k++rl +pk++ae+h + +++ t ++ + s + + r++s++yvltkGW++Fv+++gL++gD++vF+ + OGLUM02G34080.2 1173 FEKAVTPIDVGKLNRLLVPKQHAEKHfplrrtsSDASATAAAATCNSARACSSTSRT-ARGSSQSYVLTKGWSRFVREKGLRAGDTIVFSGS 1263 89***********************999865333334444555555555555555.4999999**********************954 PP

Sequence ? help Back to Top
Protein Sequence Length: 1348 aa Download sequence
MHKIGAGGSC EKAESEACVH ESARRRGVPM DEKRAARTPR AGARNAVNGG ESGCCSEKAA 60 RWGWRAPVEV AVVGFVATLT LLVLLYGGTG SLLSFTSPRT EFVQKLAAAA ASPSHGAPED 120 TPETSTRHDD DRLLGGLLSP AFDEHSCRSR YTSSLYRRRS PFRPSTYLVE RLRRYEARHK 180 RCGPGSALFQ EAVEHLRSGR NAARSECQYV VWTPFNGLGN RMLALASTFL YALLTDRVLL 240 VHAPPEFDGL FCEPFPGSSW TLPADFLITD FDGVFTMWSP TSYKNMRQAG TISNATAEQS 300 LPAYVFLDLI QSFTDAAFCD DDQQVLAKFN WMVIKSDVYF AAMLFLMPAY ERELTQLFPE 360 KEAVFHHLAR YLFHPSNDVW GIVHRFYEAY LARADELVGL QVRVFPEMPI PFDNMYEQII 420 RCSEQEGLLP KLGQTVVVTA ANGSSVVAPS TKLTSILVTS LFPDYYDRIR GVYHARPTET 480 GEYVAVHQPS HEREQRTEAR GHNQRALAEI YLLSFCDRVV TSAVSTFGYI AHGLAGVRPW 540 VLLRPPSPVA RAEPACVRSE TVEPCLQALP RRMCGAAEGS DIGALVPHIR HCEDVQKGVK 600 LSWPPAGRAA ENEARRWGRL RRASARAALV LCSLTMIPVV VVLHRCAVSS SWPDRVFEAK 660 HIAGAGEQDM QDDLPDDLTA SQYIGYDKFL GGLLQEGFDE VSCRSRYQFA RYHKNFTRIP 720 SSYLLERLRR QEALQKKCGP GTKSYKQAVK LLRSSQGVNM TTDCNYLFLT VHAGLGNRML 780 EIASAFLYAL LTNRILLLDR YQEIGDLFCE PFPGTSWLMP SDFPLNYGEF TQSSPESYGN 840 MLQNKVVGDN TDRSLAGSRP PYMFLYLDGN YEFHDKLFFC EDDQQFLQDV PWLIMRTDMY 900 FIPSLFLIPS YQDELSRLFP EKDAVFHHLA RYLFHPTNSI WYSVKGYYRS YLAKANKTVG 960 IQIRIFEKEG ILQKNGRFPY VLEQILSCAQ NEKLLPEISM KDEAEAPTAT KNNQTIAVLT 1020 TSLSSWYSDQ IQKKYSEHPT VDGTRVEVYQ PSHEEYQRSK NKKHNMKALA EIYLLSMTDV 1080 LITSGFSTFG YAAQGLSGLT PWIMFRSENH AMPDPPCRRA MSIEPCFHQA PFYDCKAKRN 1140 ADLGKMVPFV RHCEDVSWGL KVPTPSWARE PLFEKAVTPI DVGKLNRLLV PKQHAEKHFP 1200 LRRTSSDASA TAAAATCNSA RACSSTSRTA RGSSQSYVLT KGWSRFVREK GLRAGDTIVF 1260 SGSAYGPDKL LFIDCKKNNT AAATGDEKPI TSGEATRVVR LFGMDIAGGG GDCRKRERAV 1320 EMGQEAFLMK RQCVHSAPHY TVRSAKAI

Sequence ? help Back to Top

Protein Sequence Length: 1348 aa Download sequence

MHKIGAGGSC EKAESEACVH ESARRRGVPM DEKRAARTPR AGARNAVNGG ESGCCSEKAA  60
RWGWRAPVEV AVVGFVATLT LLVLLYGGTG SLLSFTSPRT EFVQKLAAAA ASPSHGAPED  120
TPETSTRHDD DRLLGGLLSP AFDEHSCRSR YTSSLYRRRS PFRPSTYLVE RLRRYEARHK  180
RCGPGSALFQ EAVEHLRSGR NAARSECQYV VWTPFNGLGN RMLALASTFL YALLTDRVLL  240
VHAPPEFDGL FCEPFPGSSW TLPADFLITD FDGVFTMWSP TSYKNMRQAG TISNATAEQS  300
LPAYVFLDLI QSFTDAAFCD DDQQVLAKFN WMVIKSDVYF AAMLFLMPAY ERELTQLFPE  360
KEAVFHHLAR YLFHPSNDVW GIVHRFYEAY LARADELVGL QVRVFPEMPI PFDNMYEQII  420
RCSEQEGLLP KLGQTVVVTA ANGSSVVAPS TKLTSILVTS LFPDYYDRIR GVYHARPTET  480
GEYVAVHQPS HEREQRTEAR GHNQRALAEI YLLSFCDRVV TSAVSTFGYI AHGLAGVRPW  540
VLLRPPSPVA RAEPACVRSE TVEPCLQALP RRMCGAAEGS DIGALVPHIR HCEDVQKGVK  600
LSWPPAGRAA ENEARRWGRL RRASARAALV LCSLTMIPVV VVLHRCAVSS SWPDRVFEAK  660
HIAGAGEQDM QDDLPDDLTA SQYIGYDKFL GGLLQEGFDE VSCRSRYQFA RYHKNFTRIP  720
SSYLLERLRR QEALQKKCGP GTKSYKQAVK LLRSSQGVNM TTDCNYLFLT VHAGLGNRML  780
EIASAFLYAL LTNRILLLDR YQEIGDLFCE PFPGTSWLMP SDFPLNYGEF TQSSPESYGN  840
MLQNKVVGDN TDRSLAGSRP PYMFLYLDGN YEFHDKLFFC EDDQQFLQDV PWLIMRTDMY  900
FIPSLFLIPS YQDELSRLFP EKDAVFHHLA RYLFHPTNSI WYSVKGYYRS YLAKANKTVG  960
IQIRIFEKEG ILQKNGRFPY VLEQILSCAQ NEKLLPEISM KDEAEAPTAT KNNQTIAVLT  1020
TSLSSWYSDQ IQKKYSEHPT VDGTRVEVYQ PSHEEYQRSK NKKHNMKALA EIYLLSMTDV  1080
LITSGFSTFG YAAQGLSGLT PWIMFRSENH AMPDPPCRRA MSIEPCFHQA PFYDCKAKRN  1140
ADLGKMVPFV RHCEDVSWGL KVPTPSWARE PLFEKAVTPI DVGKLNRLLV PKQHAEKHFP  1200
LRRTSSDASA TAAAATCNSA RACSSTSRTA RGSSQSYVLT KGWSRFVREK GLRAGDTIVF  1260
SGSAYGPDKL LFIDCKKNNT AAATGDEKPI TSGEATRVVR LFGMDIAGGG GDCRKRERAV  1320
EMGQEAFLMK RQCVHSAPHY TVRSAKAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-26	RAV family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G34080.2