PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G34080.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Protein Properties

Length: 1445aa MW: 161553 Da PI: 8.0853

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G34080.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.2	3.6e-19	1270	1360	1	85
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tp dv+k++rl +pk++ae+h + +++ t ++ + s + + r++s++yvltkGW++Fv+++gL++gD++vF+ + OGLUM02G34080.1 1270 FEKAVTPIDVGKLNRLLVPKQHAEKHfplrrtsSDASATAAAATCNSARACSSTSRT-ARGSSQSYVLTKGWSRFVREKGLRAGDTIVFSGS 1360 89***********************999865333334444555555555555555.4999999**********************954 PP

Sequence ? help Back to Top
Protein Sequence Length: 1445 aa Download sequence
MHKIGAGGSC EKAESEACVH ESARRRGVPM DEKRAARTPR AGARNAVNGG ESGCCSEKAA 60 RWGWRAPVEV AVVGFVATLT LLVLLYGGTG SLLSFTSPRT EFVQKLAAAA ASPSHGAPED 120 TPETSTRHDD DRLLGGLLSP AFDEHSCRSR YTSSLYRRRS PFRPSTYLVE RLRRYEARHK 180 RCGPGSALFQ EAVEHLRSGR NAARSECQYV VWTPFNGLGN RMLALASTFL YALLTDRVLL 240 VHAPPEFDGL FCEPFPGSSW TLPADFLITD FDGVFTMWSP TSYKNMRQAG TISNATAEQS 300 LPAYVFLDLI QSFTDAAFCD DDQQVLAKFN WMVIKSDVYF AAMLFLMPAY ERELTQLFPE 360 KEAVFHHLAR YLFHPSNDVW GIVHRFYEAY LARADELVGL QVRVFPEMPI PFDNMYEQII 420 RCSEQEGLLP KLGQTVVVTA ANGSSVVAPS TKLTSILVTS LFPDYYDRIR GVYHARPTET 480 GEYVAVHQPS HEREQRTEAR GHNQRALAEI YLLSFCDRVV TSAVSTFGYI AHGLAGVRPW 540 VLLRPPSPVA RAEPACVRSE TVEPCLQALP RRMCGAAEGS DIGALVPHIR HCEDVQKGVK 600 LSWPPAGRAA ENEARRWGRL RRASARAALV LCSLTMIPVV VVLHRCAVSS SWPDRVFEAK 660 HIAGAGEQAL PIETHMERSG GGGADGDEER LPLHHGFETE RAAPWAAAES KPPPPPRGRF 720 GRASVRAALA VCFLAIPAVL LLQRWQAGSS PEWLFEIEPP ADGDRDMQDD LPDDLTASQY 780 IGYDKFLGGL LQEGFDEVSC RSRYQFARYH KNFTRIPSSY LLERLRRQEA LQKKCGPGTK 840 SYKQAVKLLR SSQGVNMTTD CNYLFLTVHA GLGNRMLEIA SAFLYALLTN RILLLDRYQE 900 IGDLFCEPFP GTSWLMPSDF PLNYGEFTQS SPESYGNMLQ NKVVGDNTDR SLAGSRPPYM 960 FLYLDGNYEF HDKLFFCEDD QQFLQDVPWL IMRTDMYFIP SLFLIPSYQD ELSRLFPEKD 1020 AVFHHLARYL FHPTNSIWYS VKGYYRSYLA KANKTVGIQI RIFEKEGILQ KNGRFPYVLE 1080 QILSCAQNEK LLPEISMKDE AEAPTATKNN QTIAVLTTSL SSWYSDQIQK KYSEHPTVDG 1140 TRVEVYQPSH EEYQRSKNKK HNMKALAEIY LLSMTDVLIT SGFSTFGYAA QGLSGLTPWI 1200 MFRSENHAMP DPPCRRAMSI EPCFHQAPFY DCKAKRNADL GKMVPFVRHC EDVSWGLKVP 1260 TPSWAREPLF EKAVTPIDVG KLNRLLVPKQ HAEKHFPLRR TSSDASATAA AATCNSARAC 1320 SSTSRTARGS SQSYVLTKGW SRFVREKGLR AGDTIVFSGS AYGPDKLLFI DCKKNNTAAA 1380 TGDEKPITSG EATRVVRLFG MDIAGGGGDC RKRERAVEMG QEAFLMKRQC VHSAPHYTVR 1440 SAKAI

Sequence ? help Back to Top

Protein Sequence Length: 1445 aa Download sequence

MHKIGAGGSC EKAESEACVH ESARRRGVPM DEKRAARTPR AGARNAVNGG ESGCCSEKAA  60
RWGWRAPVEV AVVGFVATLT LLVLLYGGTG SLLSFTSPRT EFVQKLAAAA ASPSHGAPED  120
TPETSTRHDD DRLLGGLLSP AFDEHSCRSR YTSSLYRRRS PFRPSTYLVE RLRRYEARHK  180
RCGPGSALFQ EAVEHLRSGR NAARSECQYV VWTPFNGLGN RMLALASTFL YALLTDRVLL  240
VHAPPEFDGL FCEPFPGSSW TLPADFLITD FDGVFTMWSP TSYKNMRQAG TISNATAEQS  300
LPAYVFLDLI QSFTDAAFCD DDQQVLAKFN WMVIKSDVYF AAMLFLMPAY ERELTQLFPE  360
KEAVFHHLAR YLFHPSNDVW GIVHRFYEAY LARADELVGL QVRVFPEMPI PFDNMYEQII  420
RCSEQEGLLP KLGQTVVVTA ANGSSVVAPS TKLTSILVTS LFPDYYDRIR GVYHARPTET  480
GEYVAVHQPS HEREQRTEAR GHNQRALAEI YLLSFCDRVV TSAVSTFGYI AHGLAGVRPW  540
VLLRPPSPVA RAEPACVRSE TVEPCLQALP RRMCGAAEGS DIGALVPHIR HCEDVQKGVK  600
LSWPPAGRAA ENEARRWGRL RRASARAALV LCSLTMIPVV VVLHRCAVSS SWPDRVFEAK  660
HIAGAGEQAL PIETHMERSG GGGADGDEER LPLHHGFETE RAAPWAAAES KPPPPPRGRF  720
GRASVRAALA VCFLAIPAVL LLQRWQAGSS PEWLFEIEPP ADGDRDMQDD LPDDLTASQY  780
IGYDKFLGGL LQEGFDEVSC RSRYQFARYH KNFTRIPSSY LLERLRRQEA LQKKCGPGTK  840
SYKQAVKLLR SSQGVNMTTD CNYLFLTVHA GLGNRMLEIA SAFLYALLTN RILLLDRYQE  900
IGDLFCEPFP GTSWLMPSDF PLNYGEFTQS SPESYGNMLQ NKVVGDNTDR SLAGSRPPYM  960
FLYLDGNYEF HDKLFFCEDD QQFLQDVPWL IMRTDMYFIP SLFLIPSYQD ELSRLFPEKD  1020
AVFHHLARYL FHPTNSIWYS VKGYYRSYLA KANKTVGIQI RIFEKEGILQ KNGRFPYVLE  1080
QILSCAQNEK LLPEISMKDE AEAPTATKNN QTIAVLTTSL SSWYSDQIQK KYSEHPTVDG  1140
TRVEVYQPSH EEYQRSKNKK HNMKALAEIY LLSMTDVLIT SGFSTFGYAA QGLSGLTPWI  1200
MFRSENHAMP DPPCRRAMSI EPCFHQAPFY DCKAKRNADL GKMVPFVRHC EDVSWGLKVP  1260
TPSWAREPLF EKAVTPIDVG KLNRLLVPKQ HAEKHFPLRR TSSDASATAA AATCNSARAC  1320
SSTSRTARGS SQSYVLTKGW SRFVREKGLR AGDTIVFSGS AYGPDKLLFI DCKKNNTAAA  1380
TGDEKPITSG EATRVVRLFG MDIAGGGGDC RKRERAVEMG QEAFLMKRQC VHSAPHYTVR  1440
SAKAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	2e-26	RAV family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G34080.1