PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G33380.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 338aa    MW: 36330.5 Da    PI: 8.098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G33380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20168217255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  OGLUM02G33380.1 168 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 217
                      59******9.**********965...5*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MAAAIDMYKY NTSTHQIASS DQELMKALEP FIRSASSSSA SSPCHHYYSS SPSMSQDSYM  60
PTPSYPTSSI TTAATTTTSS FSQLPPLYSS QYHAASPAAS ATNGPMGLTH LGPAQIQQIQ  120
AQFLAQQQQQ RALAGAFLRP RGQPMKQSGS PPRAGPFAAV AGAAQSKLYR GVRQRHWGKW  180
VAEIRLPKNR TRLWLGTFDT AEDAALAYDK AAFRLRGDLA RLNFPTLRRG GAHLAGPLHA  240
SVDAKLTAIC QSLATSSSKN TPAESAASAA EPESPKCSAS TEGEDSVSAG SPPPPTPLSP  300
PVPEMEKLDF TEAPWDESET FHLRKYPSWE IDWDSILS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-48ERF family protein