PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G31840.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 341aa MW: 37444 Da PI: 4.4431

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G31840.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.5	1.4e-20	75	128	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k OGLUM02G31840.1 75 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 128 5678*************************************************9 PP
2	HD-ZIP_I/II	132.6	1.5e-42	74	166	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++L++++++ OGLUM02G31840.1 74 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMS 166 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MESGRLIFST AGSGAGQMLF LDCGAGGGGG GAMFHRGARP VLGMEEGGRG VKRPFFTTPD 60 ELLEEEYYDE QLPEKKRRLT PEQVHLLERS FEEENKLEPE RKTELARKLG LQPRQVAVWF 120 QNRRARWKTK QLERDFDRLK ASFDALRADH DALLQDNHRL HSQVMSLTEK LQEKETTTEG 180 SAGGAVDVPG LPAAADVKVA VPDAEEPALE EAAAAFEEQQ EQQVKAEDRL STGSGGSAVV 240 DTDAQLVVGC GRQHLAAVDS SVESYFPGGD EYHDCVMGPM DHAAGGIQSE EDDGAGSDEG 300 CSYYADDAGV LFADHGHHHH HQHADDDEED GQQISCWWMW N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	131	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-58	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G31840.1