PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G31630.6
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 238aa    MW: 27155 Da    PI: 7.2156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G31630.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-084352055
                     HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +e LrellP+     ++K +Ka+ L +++eYI+ Lq
  OGLUM02G31630.6  4 LEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 35
                     789*******8....8*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MKTLEILREL LPHTDQKRDK ASFLSEVIEY IRFLQEKVQK YEEADPERNH EDSKSMPWAK  60
VYYRSCWRNT KNTSQVQGED LSPSTQDMNN EQYGPKHISA AQPALFNTQS VTSTTTSSSH  120
MATGTPQNLE KNSTPSNQPP WLSMSTMRQE SEPGNKMPNK HEKQTLHDEN HSISSAYSQG  180
LFNRLTEALK KSGLDPSQAN IAVEINLAKR ARDNTSDNSK INEDEEPIQI TKRRCNKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-24bHLH family protein