PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G30450.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 300aa    MW: 30919.8 Da    PI: 5.9092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G30450.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09214255955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  OGLUM02G30450.1 214 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 255
                      69******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MRMALVRERA MVYGGGFDAE AFGGGFESSQ MGYGHDALLD IDAAALFGGY EAAASAGCAL  60
VQDGAAGWAG AGASSSVLAF DRAAQAEEAE CDAWIEAMDQ SYGAGGEAAP YRSTTAVAFD  120
AATGCFSLTE RATGGGGGAG GRQFGLLFPS TSGGGVSPER AVPAPAPRGS QKRAHAESSQ  180
AMSPSKKQCG AGRKAGKAKS APTTPTKDPQ SLAAKNRRER ISERLRILQE LVPNGTKVDL  240
VTMLEKAISY VKFLQLQVKV LATDEFWPAQ GGKAPEISQV KEALDAILSS SSPLMGQLMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.16e-40bHLH family protein