PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G30190.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 426aa    MW: 45054 Da    PI: 7.3018
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G30190.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.31e-29155208358
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      ++rY+eClkNhAa++G+h++DGCgEfm+s+g+   aaal CaACgCHR+FHRre++
  OGLUM02G30190.1 155 TWRYRECLKNHAARMGAHVLDGCGEFMSSPGDG--AAALACAACGCHRSFHRREPA 208
                      689**************************8887..99****************975 PP
2Homeobox17.85.6e-06318374153
                      TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +r Rt+ft+eq e++ e+ +    + ++p+a++     +++g++ r+ kvW +N + 
  OGLUM02G30190.1 318 KRFRTKFTAEQKERMREFAHrvgwRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKH 374
                      789***********987655888779****************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    
MEYKRSSHVE EEEEEEEEED DEEEDEEEQG HHQYTTAAAQ QLHPQVLGSS ASSPSSLMDS  60
AAFSRPLLPP NLSLVSPSAA AAPGGSYLHA AHHHGQGRRV EAPGGESQHQ LQRHHQPARN  120
GVLGGVAGAH AASTLALVGG GGPRGGEGAA GEAPTWRYRE CLKNHAARMG AHVLDGCGEF  180
MSSPGDGAAA LACAACGCHR SFHRREPAVV APASLSLCPA SASASAAAGV VSQSPSATPT  240
GANSSRLMPL LLAPPHMQKR PPVLPVSPAS APAALAESSS EELRPPPPPP PLPSSHPHAH  300
AAAVVAASAS APPGPSKKRF RTKFTAEQKE RMREFAHRVG WRIHKPDAAA VDAFCAQVGV  360
SRRVLKVWMH NNKHLAKTPP SPTSQPPPPP LHHDPSPPPP PHHHHHHHHH HHPPQHHQQQ  420
QQQHDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-22ZF-HD family protein