PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G29770.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 393aa MW: 41732.5 Da PI: 8.5535

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G29770.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78	9.3e-25	125	169	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ OGLUM02G29770.1 125 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVET 169 79****************************************997 PP
2	QLQ	60.9	3.5e-21	64	99	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvPp+L+++i++ OGLUM02G29770.1 64 PFTAAQYEELEQQALIYKYLVAGVPVPPDLVLPIRR 99 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MAMPYASLSP AVADHRSSPA AATASLLPFC RSTPLSAGGG GVAMGEDAPM TARWPPAAAA 60 RLPPFTAAQY EELEQQALIY KYLVAGVPVP PDLVLPIRRG LDSLAARFYN HPALGYGPYF 120 GKKLDPEPGR CRRTDGKKWR CSKEAAPDSK YCERHMHRGR NRSRKPVETQ LVAQSQPPSA 180 VVGSAAAPLA AASNGSFQNH SLYPAIAGSN GGGGGRNMPS SFGSALGSQL HMDNAAPYAA 240 VGGGTGKDLR YTAYGTRSLA DEQSQLITEA INTSIENPWR LLPSQNSPFP LSSYSQLGAL 300 SDLGQNTPSS LSKVQRQPLS FFGNDYAAVD SVKQENQTLR PFFDEWPKGR DSWSDLADEN 360 ANLSSFSGTQ LSISIPMASS DFSAASSRST NGD

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MAMPYASLSP AVADHRSSPA AATASLLPFC RSTPLSAGGG GVAMGEDAPM TARWPPAAAA  60
RLPPFTAAQY EELEQQALIY KYLVAGVPVP PDLVLPIRRG LDSLAARFYN HPALGYGPYF  120
GKKLDPEPGR CRRTDGKKWR CSKEAAPDSK YCERHMHRGR NRSRKPVETQ LVAQSQPPSA  180
VVGSAAAPLA AASNGSFQNH SLYPAIAGSN GGGGGRNMPS SFGSALGSQL HMDNAAPYAA  240
VGGGTGKDLR YTAYGTRSLA DEQSQLITEA INTSIENPWR LLPSQNSPFP LSSYSQLGAL  300
SDLGQNTPSS LSKVQRQPLS FFGNDYAAVD SVKQENQTLR PFFDEWPKGR DSWSDLADEN  360
ANLSSFSGTQ LSISIPMASS DFSAASSRST NGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-46	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G29770.1