PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G28580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 618aa MW: 64242.6 Da PI: 9.1169 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 300.2 | 5.1e-92 | 254 | 618 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL e+A av++g++++a +lL+ l+ a+p+gd+ qRl+a+++ AL++r+ p+++ ++ s e+ a +l+++vsP++ ++ OGLUM02G28580.1 254 RQLLSEAAAAVADGNHTAAASLLSALKLSANPRGDAEQRLVAMMVAALSSRVGT--------GPSQHLADLYSGEHRATCQLLQDVSPCFGLAL 339 689*************************************************98........5556666556888889999************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakr 185 aN aIl+av+g++++H +Dfd+s +Q +aL++aLa+R+ ++ sl++T+v++p+s +++l +t erL+k+A++ g++f+f++ v+ r OGLUM02G28580.1 340 HGANLAILDAVAGHRAIHLVDFDVSA-AQHVALIKALADRRVPATSLKVTVVADPTSPftpaMTQSLAATCERLKKLAQQAGIDFRFRA-VSCR 431 ************************85.8**************************9988899999*************************.7899 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 ++e ++L ++pgEalaVnl++ l r++desvs +++rde+L+ v+ l P+vv++veqe+++n+++ ++rf++a +y a+++sl+a+l+r+s OGLUM02G28580.1 432 APEIEASKLGCEPGEALAVNLAFTLSRVPDESVSPANPRDELLRRVRALGPRVVTLVEQELNTNTAPMAARFSDASAHYGAVLESLDATLGRDS 525 ********************************************************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +r+ E++ l+ ++ n v eg +r+er+e ++kWr+r+++aGF++v+++e++ +++ l + v+ ++g l gW++r ++++SaW OGLUM02G28580.1 526 ADRTRAEAA-LASKVANGVGREGPDRVERCEVFGKWRARFGMAGFRAVAIGEDIGGRVRARLGPAL-PAFDVKLDNGRLGVGWMGRVVTVASAW 617 ********9.9***************************************************9998.66************************* PP GRAS 374 r 374 r OGLUM02G28580.1 618 R 618 8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence |
MDPAGAPWCD PRRGYGGYGV GSAALQAAAR QQSQQPRSDG AGGAGVTGGV LKRSLGEMER 60 WQQQRQVAAQ QAMYLRSVRQ RMDIGAVLGG AASSPAYGIS GLSSGFGGIS QQQPSSTMSS 120 LTTASRTVMP GMQQQRRMMA VPTPQNQAVA RAPAARPATA TELVLLQELE KQLLGDDEEA 180 DAAGSGCGSG ITSSDWGDTI QRLNSVTAAS SPSLPLPTVV NSTALLARSP TNSSSSTASS 240 SASSSPPISA ASSRQLLSEA AAAVADGNHT AAASLLSALK LSANPRGDAE QRLVAMMVAA 300 LSSRVGTGPS QHLADLYSGE HRATCQLLQD VSPCFGLALH GANLAILDAV AGHRAIHLVD 360 FDVSAAQHVA LIKALADRRV PATSLKVTVV ADPTSPFTPA MTQSLAATCE RLKKLAQQAG 420 IDFRFRAVSC RAPEIEASKL GCEPGEALAV NLAFTLSRVP DESVSPANPR DELLRRVRAL 480 GPRVVTLVEQ ELNTNTAPMA ARFSDASAHY GAVLESLDAT LGRDSADRTR AEAALASKVA 540 NGVGREGPDR VERCEVFGKW RARFGMAGFR AVAIGEDIGG RVRARLGPAL PAFDVKLDNG 600 RLGVGWMGRV VTVASAWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-93 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM02G28580.1 |