PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G26320.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 431aa    MW: 45088.9 Da    PI: 8.501
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G26320.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19350384135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  OGLUM02G26320.1 350 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 384
                      *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    
MTHQALIPST PPSAFSPASH FLHASSSSSS PSLSSHAVVA AAAAAMSSFA HHHHGSLVEK  60
DGRMSALRSS LRPYEAAEEM AAAAAAGGPA AAWGAVERGA GMMGDGFSVE DLLDLEELCE  120
VDRDGGEQGE AAAAAVVEKE RSSDSHGSSV VSYEPMPLLP PVMDLPAHDV EELEWVSRIM  180
DDSLAELPLP QLPAAAAALA ACGKPQHRRP HEGAASALLD PMRTPTICAL STEALVPVKS  240
RRSKRSRASV WSLSGAPLSD STSSSSTATT SSCSSSASFS PFLQYVDFPA LVASDLLDEQ  300
PRSKKSKHGK NGKQKPKKRG RKPKHQQPPH LAAAAAAGGA ALPATGDRRC SHCGVQKTPQ  360
WRAGPEGAKT LCNACGVRYK SGRLLPEYRP ACSPTFVSSL HSNSHRKVLE MRRKKETPVI  420
VAAAAPAVAS F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA family protein