PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G26220.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 370aa MW: 41187.2 Da PI: 6.9384

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G26220.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.2	2.2e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv++yL+kkv++kk++l +vik+vd+yk+ePwdL++ k+ e+++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk+ OGLUM02G26220.1 7 VPPGFRFHPTDEELVDYYLRKKVASKKIDL-DVIKDVDLYKIEPWDLQEkcKIGMeEQNDWYFFSHKDKKYPTGTRTNRATGAGFWKATGRDKP 99 69**************************.9***********952433333556******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ + lvg++ktLvfykgrap+g+k+dW+mheyrle OGLUM02G26220.1 100 IYA-RCCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 .8889***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MDTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQEKCKIGM 60 EEQNDWYFFS HKDKKYPTGT RTNRATGAGF WKATGRDKPI YARCCLVGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTTPEEGWVV CRVFKKRVAT VRRMADGSPC WFDDHGAVGA 180 FMPDLSSPRQ LLPHHHHHHP GSSAALYHGH HHQQLQQMYG HCKPELEYHH LLPQEAFLQH 240 LPQLESPKPP PPPPAAAAYI GGHLGSSSST ALTTHDDEAS GSAAQQQPPS LEAVYMAGAG 300 VGIGVDASVT DWRLLDKFVA SQLLSKESMS SYGSHPAQVF QAADGGKHEE ALDYASTSAG 360 SGGGEADLWK

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MDTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQEKCKIGM  60
EEQNDWYFFS HKDKKYPTGT RTNRATGAGF WKATGRDKPI YARCCLVGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTTPEEGWVV CRVFKKRVAT VRRMADGSPC WFDDHGAVGA  180
FMPDLSSPRQ LLPHHHHHHP GSSAALYHGH HHQQLQQMYG HCKPELEYHH LLPQEAFLQH  240
LPQLESPKPP PPPPAAAAYI GGHLGSSSST ALTTHDDEAS GSAAQQQPPS LEAVYMAGAG  300
VGIGVDASVT DWRLLDKFVA SQLLSKESMS SYGSHPAQVF QAADGGKHEE ALDYASTSAG  360
SGGGEADLWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	3e-93	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G26220.1