PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G23590.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 275aa    MW: 27898.8 Da    PI: 7.4806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G23590.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000332372563655
                      S-STCHHHHHHHHHHHHHHH CS
              HLH  36 kKlsKaeiLekAveYIksLq 55 
                      +  s a++L +Ave+Ik Lq
  OGLUM02G23590.1 237 RQTSTADMLDLAVEHIKGLQ 256
                      4489***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MMRRFLPVGG GGGGGVEPSS SSTTPQRGEA EAAGLRFGGG DISLGPHGGG GGGGGGHGHQ  60
LQDGSVDLLA RHSSSPAGFF SNLMASNGSK GGGGSGAEAH HHHHPPSMAG SGSGSSSGGR  120
KMKSQLSFTA GPPHLSHIAE DGAFPDRAGA EASVPRTFSA GGSSGGGGFS IVGPWEESRD  180
IISTLGGYES QFGGMASTSA LEMAGMDRYL QLQHDQVPFK VRAKRGCATH PRSIAERQTS  240
TADMLDLAVE HIKGLQSQLQ ALKHEQEKCT CCSRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-28bHLH family protein