PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G21630.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 385aa MW: 40863 Da PI: 6.7383

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G21630.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.5e-07	172	193	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H OGLUM02G21630.1 172 FCDICGKGFRRDANLRMHMRAH 193 6*******************99 PP
2	zf-C2H2	12.4	0.00047	257	281	1	23
EEETTTT..EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg..ksFsrksnLkrHirtH 23 y C+ Cg k+F +L++H+r + OGLUM02G21630.1 257 YACERCGgkKRFAVLADLRSHLRHC 281 89********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MKSTTHLLAG GGGGGGSVAP PTAATAPTLA MEVGDPYGAL VGGAGAGGGD GDARDALLRL 60 VALGDRMAAV RRRIAASISG ESGPLSSSDI HSVSSEISSA AHLVVLNAAS LLSSTVASLP 120 APPPPPATTV QELPPVVVSV PQEPPQEAAK GDGDYDVVEL DASELLAEHV HFCDICGKGF 180 RRDANLRMHM RAHGDRFKTL DALSRPGQPK PPAGREVRFS CPYAGCNRNR AHRRFRPLKS 240 AVCARNHFRR SHCPKLYACE RCGGKKRFAV LADLRSHLRH CGEEAQWRCS CGTTFSRKDK 300 LFGHLALFEG HTPAIAEPNK GVATAAAEAS ISMMEEGGVG ANCDREEDEE GGFDPKFFQE 360 WMEELRGGAV APNWPMVGRD DWEDE

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MKSTTHLLAG GGGGGGSVAP PTAATAPTLA MEVGDPYGAL VGGAGAGGGD GDARDALLRL  60
VALGDRMAAV RRRIAASISG ESGPLSSSDI HSVSSEISSA AHLVVLNAAS LLSSTVASLP  120
APPPPPATTV QELPPVVVSV PQEPPQEAAK GDGDYDVVEL DASELLAEHV HFCDICGKGF  180
RRDANLRMHM RAHGDRFKTL DALSRPGQPK PPAGREVRFS CPYAGCNRNR AHRRFRPLKS  240
AVCARNHFRR SHCPKLYACE RCGGKKRFAV LADLRSHLRH CGEEAQWRCS CGTTFSRKDK  300
LFGHLALFEG HTPAIAEPNK GVATAAAEAS ISMMEEGGVG ANCDREEDEE GGFDPKFFQE  360
WMEELRGGAV APNWPMVGRD DWEDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	5e-70	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G21630.1