PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G21270.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 395aa MW: 42485.3 Da PI: 6.6227

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G21270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	198	252	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +++ +LA++l+L rqV vWFqNrRa+ k OGLUM02G21270.1 198 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTK 252 788899***********************************************98 PP
2	HD-ZIP_I/II	125.9	1.8e-40	198	289	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr +l+ OGLUM02G21270.1 198 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALR 289 69**************************************************************************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MRFKFDSESS VSRRPLSADR PRPSWRLDGG AMLTSPGFEI TAAMQICSRS DATGDSPAPV 60 KATIAPTPVL TPTCMGDEED LELVLGVRAT RRDEQDDQTT CTQSSEEAME GEEDETRPHG 120 EAPVESLSFP LFVSSAETGS ANSEMCTRGF DVNTRPADGG AEAGRPSSPS SMQEASTRQQ 180 VADQEAADDE DNGGGGARKK LRLSKEQSSF LEDSFKEHST LTPKQKSDLA NRLNLRPRQV 240 EVWFQNRRAR TKLKQTEVDC EHLKRCCERL TRENRRLQRE VAELRGALRT TTSSYPPLYG 300 LHHLPAAAGT VFRVCPSCEH SKVVAAAASE SFSPRVFACG GAPAAITAAA AVPSPGAGSP 360 PSSSAALFGA RRPHFGPFAA AVIPPVLRRQ PSATS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MRFKFDSESS VSRRPLSADR PRPSWRLDGG AMLTSPGFEI TAAMQICSRS DATGDSPAPV  60
KATIAPTPVL TPTCMGDEED LELVLGVRAT RRDEQDDQTT CTQSSEEAME GEEDETRPHG  120
EAPVESLSFP LFVSSAETGS ANSEMCTRGF DVNTRPADGG AEAGRPSSPS SMQEASTRQQ  180
VADQEAADDE DNGGGGARKK LRLSKEQSSF LEDSFKEHST LTPKQKSDLA NRLNLRPRQV  240
EVWFQNRRAR TKLKQTEVDC EHLKRCCERL TRENRRLQRE VAELRGALRT TTSSYPPLYG  300
LHHLPAAAGT VFRVCPSCEH SKVVAAAASE SFSPRVFACG GAPAAITAAA AVPSPGAGSP  360
PSSSAALFGA RRPHFGPFAA AVIPPVLRRQ PSATS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	255	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-52	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G21270.1