PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G20210.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 316aa    MW: 32552.5 Da    PI: 5.4351
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G20210.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-1392141255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+h  +Er RR++i++ f  Lr+l+P++      K +Ka+i+ +A+ +I+sL+
  OGLUM02G20210.1  92 ERMHIFAERERRRKIKNMFTDLRDLVPSL----TNKADKATIVGEAISFIRSLE 141
                      578999**********************9....68*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MAQEGTSSNA PPAAASMGSG DGDNKEGTGE SGNNQLLLPA IAASADKGKG VVAGTGNVDA  60
KGKTTATAPA ASSTNAPNNQ GGGGGGGGRS RERMHIFAER ERRRKIKNMF TDLRDLVPSL  120
TNKADKATIV GEAISFIRSL EETVADLERR KRERDSLAAR CARLGLGGSS SSSAPPPPPP  180
PAAADDTAAV MPPAPAVPPP DAAAVTAGPE PAPAPAPGTL MVWSGPSVVL NLCGGDQAFI  240
NVSVARRPGV LTMIVDVLER HSIDVVTAQI ASDQSRSLFT IHTSVDRERG MFMDTATAEE  300
IYQLAVSEIM VWLHSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-16bHLH family protein