PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM02G19870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 871aa MW: 96100.1 Da PI: 9.2173 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 71.1 | 2.1e-22 | 779 | 859 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++ Li++r em+e++++ k ++ lWee+s+ m ++g++r+p qCk+ w +l ++y++ k+ e++ ++t+pyf +++ OGLUM02G19870.1 779 KWKPEEIKSLIQMRGEMNEQFQTVKGRMVLWEEISSSMLSQGISRTPAQCKSLWTSLVQKYEESKKDEES-----VKTWPYFLDMD 859 7*****************************************************************9998.....689******98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 871 aa Download sequence |
MVALASLSSL SPCGLARRRS SSSAASISCC AAPPPPSAKG SQESRTPRRR VRKTEGATKS 60 LEDSVKRKME QFYEGLDGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GVMFPDFDEF 120 GVQKIIPDTT FIKKWSHKIE AVIITHGHED HIGALPWVIP ALDSSTPIFA SSFTMELIKR 180 RLKEFGIFLS SRLKVFRVRK RFQAGPFEVE PLRVTHSIPD CCGLVLRCAD GIIFHTGDWK 240 IDESPVDGKI FDRQALEELS KEGVTLMMSD STNVLSPGRS ISESVVAGSL LRHISEAKGR 300 VITTQFASNI HRIGSIKAAA DLTGRKLVFV GMSLRTYLDA AFRDGKSPID PSTLVKVEDM 360 DAYAPNDLLV VTTGSQAEPR AALNLASFGG SHALKLSKED VLLYSAKVIP GNESRVMKML 420 NRLTELGPKI VMGKDAGLHT SGHAYHDELE EVLQIVKPQH FLPVHGELLF LKEHELLGRS 480 TGIRHTTVIK NGEMLGVSHL RNRRVLSNGF VALGKEDLRL MYSDGDKAFG TSTDLCIDER 540 LRIASDGVIF VSMEIFRPQK ELASSQSGLK GKFKITTRCL WLDNGRLLDA LYKAAYAALS 600 SCPVNCPLSH MERMVSEILR KMVRKYSGKR PDVIAVATEN TTVSFVEDSE TKSSGKFGSF 660 SAPRHSSRSS GRSLEESDKS RPENTEGEAK ENLPDVLRTT RDDATTSSNG EAFFSSDLHK 720 PKTLEHFWDS FKSPTAVKIA RIVNGSAQGS KSKIGKISIV GKDSSDPSSA PVKSSKKNKW 780 KPEEIKSLIQ MRGEMNEQFQ TVKGRMVLWE EISSSMLSQG ISRTPAQCKS LWTSLVQKYE 840 ESKKDEESVK TWPYFLDMDR VLSSQGEMAT Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM02G19870.1 |