PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G15730.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 272aa    MW: 29864.4 Da    PI: 7.8192
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G15730.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1529132198
                      EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f kvl+psdv+    +lv+p +++ +       + ++ + + +++ed   +g+ W +++  +k+++ + ltkGW  +++++gL++gD+v F ++
  OGLUM02G15730.1  29 FGKVLMPSDVSWDtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVTGKLWLFRY--WKRDDVHCLTKGWGCYAREKGLRAGDTVSFFHS 120
                      6799******977699********9999999976666667777888866677*******..******************************976 PP

                      SSSEE..EEEEE- CS
               B3  86 grsefelvvkvfr 98 
                         ++++++  +r
  OGLUM02G15730.1 121 T-ACGRFFICCRR 132
                      5.55555666555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW DTEQLVIPDE HVGKLLDMVV  60
MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS  120
TACGRFFICC RRTCMSFLSL PTTSHRIHGS SVLPQPRAAQ AAHHPFSGHA TLCLGNKASD  180
HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS  240
TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-13B3 family protein