PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM02G12910.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 579aa MW: 61206.9 Da PI: 7.281

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G12910.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	42.7	1.5e-13	205	294	7	98
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 w+ +De+ +L l+ +++g++ ++++++ v +s++ k k s++ eK+rrLK++++ kk+++g + +ke+d +++ls+ iWg+ OGLUM02G12910.1 205 WTADDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 294 ************999999954..699*******98865538*******************9965.567889********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MARKRRAPTP PPPPPPPPPP EAESSADSSG EEEEGEEEER ESPAAPPPQK PSGRGAAAAA 60 SSDEDEEEED SDTDTYAQGF QLRKVGGGDE EGEEEEEGSG SSESEPEPGP VKKESAKKTK 120 AEAKKKRAAP EPAPSGKAKK AKPEKSAAAA PEPAPSLGKS KKAAKAEAAK AAAAEPAPST 180 GKANKSKSAP EPSPSSKSGK ALSRWTADDE VKILEVLVAH FKSHGTQLNV EGIIAAVGDS 240 LERKSIKYSD MYEKVRRLKQ RYEATAKKVE HGGDLPAKED DLRMYQLSSE IWGKNAKDAG 300 NSSKNKKGQA KKDKVSGDSK EAAKEDKVDE AATAVNEKGG TLAENKKGKT NKQKTGMETK 360 VGSSKEAALA ASPTKGKKKG SHKDKLDEEA KSGTAKVTST IATDDDGTLG GSKREKAGKE 420 ELDGDTHIVM PKEATTTAAR DDGTLVGSKK GKADNGKLDG DTHSVMPKEA TAGTQNGGIL 480 TGGENHKEKV DKDANVPSIR REYAELQSLY PNLASFVNGI EVQHPCGSTF KRAFEFISDD 540 KACTLESKIK KQKIAEVRMQ LRLADTKKEV ANALLGLLD

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MARKRRAPTP PPPPPPPPPP EAESSADSSG EEEEGEEEER ESPAAPPPQK PSGRGAAAAA  60
SSDEDEEEED SDTDTYAQGF QLRKVGGGDE EGEEEEEGSG SSESEPEPGP VKKESAKKTK  120
AEAKKKRAAP EPAPSGKAKK AKPEKSAAAA PEPAPSLGKS KKAAKAEAAK AAAAEPAPST  180
GKANKSKSAP EPSPSSKSGK ALSRWTADDE VKILEVLVAH FKSHGTQLNV EGIIAAVGDS  240
LERKSIKYSD MYEKVRRLKQ RYEATAKKVE HGGDLPAKED DLRMYQLSSE IWGKNAKDAG  300
NSSKNKKGQA KKDKVSGDSK EAAKEDKVDE AATAVNEKGG TLAENKKGKT NKQKTGMETK  360
VGSSKEAALA ASPTKGKKKG SHKDKLDEEA KSGTAKVTST IATDDDGTLG GSKREKAGKE  420
ELDGDTHIVM PKEATTTAAR DDGTLVGSKK GKADNGKLDG DTHSVMPKEA TAGTQNGGIL  480
TGGENHKEKV DKDANVPSIR REYAELQSLY PNLASFVNGI EVQHPCGSTF KRAFEFISDD  540
KACTLESKIK KQKIAEVRMQ LRLADTKKEV ANALLGLLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	165	KKKRAAPEPAPSGKAKKAKPEKSAAAAPEPAPSLGKSKKAAK

Link Out ? help Back to Top
Ensembl	OGLUM02G12910.1