PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G11890.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 456aa MW: 50833.4 Da PI: 7.7586

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G11890.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	50.6	3.7e-16	116	155	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks+ClkkYCeCf+a+ Cs++C+C+dCkN e OGLUM02G11890.2 116 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 155 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPYCEC FAARVYCDGC 60 HCSPCGNKIE NENIRKEAIE TILLRNPLAF QPKIENSPNT VTVRKDNSEA IPPIPKHNKG 120 CHCRKSECLK KYCECFQANI LCSKNCRCQD CKNFEGSEER KALVQMKNAS DRNHIQEAAN 180 FALNGATGSL GYKSSPVRRK KYQENSLGEQ ILPEAQFQPT DHADVSQLAS SCTGFGGDIA 240 SNYQSKSSEM IYRSPLANTI PLIEVNDLVK NALVACRKAP EAFLTKAGNK VEMQAEKQYQ 300 TNDEINNDKT KEQNLKEASL KDIQNKACID RQNINGTEPH LANSFKDSRP ASPGTQALMC 360 DEMDTTFGNE DYRSPFVVPS RDQDISELNA DQERIVLTGL RDYLRVLITR GNINEPNGRC 420 HSNQILVRDS NGIGFPEASW SNNCFFPRQI YVFQLS

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPYCEC FAARVYCDGC  60
HCSPCGNKIE NENIRKEAIE TILLRNPLAF QPKIENSPNT VTVRKDNSEA IPPIPKHNKG  120
CHCRKSECLK KYCECFQANI LCSKNCRCQD CKNFEGSEER KALVQMKNAS DRNHIQEAAN  180
FALNGATGSL GYKSSPVRRK KYQENSLGEQ ILPEAQFQPT DHADVSQLAS SCTGFGGDIA  240
SNYQSKSSEM IYRSPLANTI PLIEVNDLVK NALVACRKAP EAFLTKAGNK VEMQAEKQYQ  300
TNDEINNDKT KEQNLKEASL KDIQNKACID RQNINGTEPH LANSFKDSRP ASPGTQALMC  360
DEMDTTFGNE DYRSPFVVPS RDQDISELNA DQERIVLTGL RDYLRVLITR GNINEPNGRC  420
HSNQILVRDS NGIGFPEASW SNNCFFPRQI YVFQLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	5e-72	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G11890.2