PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G05810.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 478aa MW: 50406.2 Da PI: 7.0133

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G05810.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	73.9	2.8e-23	196	244	1	49
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cq+egC+adls ak+yhrrhkvC++h+ka++vl++g++qrfCqqCsr OGLUM02G05810.1 196 RCQAEGCKADLSAAKHYHRRHKVCDFHAKAAAVLAAGKQQRFCQQCSRL 244 6***********************************************7 PP
2	SBP	46.6	8.9e-15	265	295	47	77
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 +rfh l efDe+krsCr+rL +hn+rrrk++ OGLUM02G05810.1 265 ARFHVLAEFDEAKRSCRKRLTEHNRRRRKPT 295 7****************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MAVPAAAVAA DVVDFGYAAP MPPPYVGFDP AGMGGERQLF QHGGACHGLY DGGLDFSAAA 60 AFQEAATLGV GLPGGNLLQS LAPPAAAAAT PSSLQMPMMM SLPGLPATAA DVYPFGGGGF 120 VKREDGPVLD VVGGGGGGRI GLNLGRRTYF SPADVLAVDR LLLRSRLGGM GMEMGMGMGV 180 LGLGLAAAAH HHQPPRCQAE GCKADLSAAK HYHRRHKVCD FHAKAAAVLA AGKQQRFCQQ 240 CSRLAPIPRN HVAARWDPAG TRVSARFHVL AEFDEAKRSC RKRLTEHNRR RRKPTAGGQS 300 SKDSPPPPPS KKGTDASIAS SYTSCDHHKA AASTTTASGV SCLQELADHH DVGGGHQAAM 360 AAPPPPTLSL AALPPQEEDD EDEDGGLGTV LMMQQHHQRR RLQHDGDGDD DVAAHHHLMR 420 SLARQQQQHR HSSGCSNNND GDDDDHNNNN NILSCSSASD QQNSSNNNNM HFFEVDFI

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MAVPAAAVAA DVVDFGYAAP MPPPYVGFDP AGMGGERQLF QHGGACHGLY DGGLDFSAAA  60
AFQEAATLGV GLPGGNLLQS LAPPAAAAAT PSSLQMPMMM SLPGLPATAA DVYPFGGGGF  120
VKREDGPVLD VVGGGGGGRI GLNLGRRTYF SPADVLAVDR LLLRSRLGGM GMEMGMGMGV  180
LGLGLAAAAH HHQPPRCQAE GCKADLSAAK HYHRRHKVCD FHAKAAAVLA AGKQQRFCQQ  240
CSRLAPIPRN HVAARWDPAG TRVSARFHVL AEFDEAKRSC RKRLTEHNRR RRKPTAGGQS  300
SKDSPPPPPS KKGTDASIAS SYTSCDHHKA AASTTTASGV SCLQELADHH DVGGGHQAAM  360
AAPPPPTLSL AALPPQEEDD EDEDGGLGTV LMMQQHHQRR RLQHDGDGDD DVAAHHHLMR  420
SLARQQQQHR HSSGCSNNND GDDDDHNNNN NILSCSSASD QQNSSNNNNM HFFEVDFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	294	KRSCRKRLTEHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	2e-28	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G05810.1