PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM02G05530.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 328aa MW: 35687 Da PI: 9.1824

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM02G05530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.2	2.7e-39	69	146	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l +k+yhr+h+vCe+hsk p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+ OGLUM02G05530.1 69 RCQVEGCGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLYDHNARRRKPQT 146 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MDWMPPPKPT SPRSPPLLWD WADSAVPGSS SGEVSAAAAA AAAAAHPGRR RKEKRGRAEE 60 GGGGGGEVRC QVEGCGVELV GVKDYHRKHR VCEAHSKFPR VVVAGQERRF CQQCSRFHAL 120 SEFDQKKRSC RRRLYDHNAR RRKPQTDVFS YASARPPSSL LFDDSRQISF VWNKAPLSHV 180 RPFAISPWES SSEVGTTDGH IYLDKSHISK SLPAFNTDID ELLPMKGPDA SLTASKFDGA 240 PDLQRALSLL SSSSCGLPDP VQQASRVIQF TGASQNNREL PPLNGGNSAS ASCANVQTIA 300 QPAQLVRFTM DASSNACQSN FFGLNQIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	54	RRRKEK
2	126	143	KKRSCRRRLYDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	7e-38	SBP family protein

Link Out ? help Back to Top
Ensembl	OGLUM02G05530.1