PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G04770.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 909aa    MW: 100843 Da    PI: 6.1606
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G04770.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3781e-24134235199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OGLUM02G04770.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 223
                      99*****************************86555544..8************************************************..78 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OGLUM02G04770.1 224 DSNQLLLGIRRA 235
                      78889***9997 PP
2Auxin_resp120.41.4e-39260343183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  OGLUM02G04770.1 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWTNSHWRSVK 343
                      79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    
MKLSPSAGGV SDQPPSPPEV AEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV  60
AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPFLP  120
AELGTASKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDSNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PVRWTNSHWR SVKVGWDEST GGERQPRVSL  360
WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LYGGKEDDLA SSLIWLRDSQ NTGFQSLNFG  420
GLGMSPWMQP RLDSSLLGLQ PDMYQTIAAA AAALQNTTKQ VSPAMLQFQQ PQNIVGRSSL  480
LSSQILQQAQ PQFQQMYHQN INGNSIQGHS QPEYLQQPLQ HCQSFNEQKP QLQPQQQQQE  540
SHQQQPQHQQ MQQQKHLSNF QTVPNALSVF SQLSSTPQST PSTLQTVSPF SQQHNFPDTN  600
ISCLSPSNVS SMHDTLRSFP SEAASDLPGV PRITPVPVSD PWSSKRVAVE STITSRPHDI  660
SSQIENFDLT PSSIPQNSTL APLPGRECLV DQDGSSDPQN HFLFGVNIDS QSLLMQDGIP  720
SLHNENSSST IPYSTSNFLN PSQDDYPLSQ TLTTPGCLDE SGYVPCSDNA DQVKRPPATF  780
VKVYKSGTVG RLLDITRFSS YHELRSEVGR LFGLEGQLED PLRSGWQLVF VDREDDVLLV  840
GDDPWQEFVN SVSCIKILSP QEVQQMGKPG IELFSTSARR LGNSCDNYMS RQESRSLSTG  900
IASVGSVEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0ARF family protein