PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G04740.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 286aa    MW: 30789.8 Da    PI: 6.9108
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G04740.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.12e-223074145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k ienk  rqv fskRr+g++KKA+ELSvLC+a+vav+ fs+ g+
  OGLUM02G04740.1 30 KLIENKEARQVCFSKRREGVFKKASELSVLCGARVAVVFFSPAGR 74
                     569***************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MTKAAAEMDV GGGEGRRRKR TRGRQRIEMK LIENKEARQV CFSKRREGVF KKASELSVLC  60
GARVAVVFFS PAGRPHCFGH PSVPAVADRF LLGRSPAVAA AAAAEEEEAV VREFNRVEER  120
LKDALGAAAR RRDALDEAAR VAGVWNDADV RRAGLADLVS MLAALQRVQA EASERVHDII  180
VEEAMTHYTG AAAAAANLID YLDAGPFVSH SPGSHDTTTK LIGGNAVHAP PLSFPPMIMP  240
PPLPPQFSHG FGYTDLAAGY GYNLDHGHGA AYETEEFHNA AACDFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11626RRRKRTRGRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-20M-type_MADS family protein