PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G04370.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 318aa    MW: 34549.2 Da    PI: 10.1494
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G04370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly181.61.5e-561422792139
           Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                      v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l+
  OGLUM02G04370.1 142 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLS 235
                      9********************************************************************************************* PP

           Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                      v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  OGLUM02G04370.1 236 VTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 279
                      *****************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MAHSLMAVGP RRLDWAVGWP TCQARKRRHR CGWLPETSGA FPAAFFSSPI PFGIRLSVGN  60
ATAAESQGQR CSASPASSPP PVAQSVSGVL SQSLVSPFDP RDPRVTDLKD ALWSGSLTFQ  120
HALSTFAADE NTSGRKFASY TVFKGKAALS MQPILPSFSK LESGGSRVNK NGSVMLTFFP  180
AVGQRKYDYS KKQLFALSPT EVGSLISLGP AESCEFFHDP SMKSSHEGQV KKSLSVTPLG  240
NDSGYFLNIT VLNNLQKTTE RLSLPISKAE FTVMRTALSF ALPHILGWDQ ALTNHQPSPS  300
PASKPRVERP HPDSEWER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-73Whirly family protein