PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G01100.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 236aa    MW: 25607 Da    PI: 4.9237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G01100.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1170117454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++  rE+ RRdr+N++f eL +++ ++   ++ Kl+Ka iL  A + + +L
  OGLUM02G01100.1  70 SKACREKIRRDRLNDRFLELSSVINPD---KQAKLDKANILSDAARLLAEL 117
                      6789***********************...**************9887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MDGGGDPVDE FLIGGGGEDG DLGVFCDGVP TLPCDGGLGI DDVSGDTCCL DQSVLGKRGR  60
DESSSSGPKS KACREKIRRD RLNDRFLELS SVINPDKQAK LDKANILSDA ARLLAELRGE  120
AEKLKESNEK LRETIKDLKV EKNELRDEKV TLKAEKERLE QQVKALSVAP TGFIPHLPHP  180
AAFHPAAFPP FIPPYQALGN KNAPTPAAFQ GMAMWQWLPP TAVDTTQDPK LWPPNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-41bHLH family protein