PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G46870.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 427aa MW: 44507.2 Da PI: 6.322

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G46870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	233	275	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L OGLUM01G46870.1 233 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 275 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MASLLGLLFS SLLFSERCET RRRARSGGEV AMDEAEAAAK MDELAGGGGG GGGGDWSYLA 60 ADALAAASFT AFPFHHHHHH HRDVLSVSTP SSLLLNMDAA TAAAMFDFQA AFPSSSVPPP 120 PPTTTAALPP FHDFASSNPF DDAPPPFLAP PGQKLGFLGP PGGAFGGGMG WDDDDEIEQS 180 VDASSMGVSA SLENAAPVAA GGGGGGGGGG GGGGGGGGGG RGKKKGMPAK NLMAERRRRK 240 KLNDRLYMLR SVVPKISKMD RASILGDAIE YLKELLQRIN DLHNELESAP SSSLTGPSSA 300 SFHPSTPTLQ TFPGRVKEEL CPTSFPSPSG QQATVEVRMR EGHAVNIHMF CARRPGILMS 360 TLRALDSLGL GIEQAVISCF NGFAMDVFRA EQCRDGPGLG PEEIKTVLLH SAGLQNAMRT 420 DEMRLAI

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MASLLGLLFS SLLFSERCET RRRARSGGEV AMDEAEAAAK MDELAGGGGG GGGGDWSYLA  60
ADALAAASFT AFPFHHHHHH HRDVLSVSTP SSLLLNMDAA TAAAMFDFQA AFPSSSVPPP  120
PPTTTAALPP FHDFASSNPF DDAPPPFLAP PGQKLGFLGP PGGAFGGGMG WDDDDEIEQS  180
VDASSMGVSA SLENAAPVAA GGGGGGGGGG GGGGGGGGGG RGKKKGMPAK NLMAERRRRK  240
KLNDRLYMLR SVVPKISKMD RASILGDAIE YLKELLQRIN DLHNELESAP SSSLTGPSSA  300
SFHPSTPTLQ TFPGRVKEEL CPTSFPSPSG QQATVEVRMR EGHAVNIHMF CARRPGILMS  360
TLRALDSLGL GIEQAVISCF NGFAMDVFRA EQCRDGPGLG PEEIKTVLLH SAGLQNAMRT  420
DEMRLAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	241	KKKGMPAKNLMAERRRRKK
2	235	242	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	3e-93	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G46870.1