PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G46010.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 437aa MW: 47631.9 Da PI: 8.6646

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G46010.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	1.9e-10	79	104	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C++G +C+F+H++ OGLUM01G46010.1 79 GEPDCTYYLRTGLCRFGMSCRFNHPQ 104 6899********************97 PP
2	zf-CCCH	39	1.4e-12	124	149	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ OGLUM01G46010.1 124 GQPECQYYLKTGTCKFGPTCKFHHPR 149 5799********************96 PP
3	zf-CCCH	37.2	5.1e-12	171	195	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ OGLUM01G46010.1 171 EKECAYYLKTGQCKYGNTCKFHHPE 195 679********************96 PP
4	zf-CCCH	39.3	1.1e-12	332	357	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ OGLUM01G46010.1 332 DQPECQYYMKTGDCKFGAVCKFHHPR 357 689*********************96 PP
5	zf-CCCH	41.8	1.8e-13	377	402	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++elC+f++r+G+Ck+G++CkF H+ OGLUM01G46010.1 377 PGEELCKFYSRYGICKFGANCKFDHP 402 689**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MDDAGRASAP AVVTVTASAA APTPPPPPPP PPSQLPATAA ATDEPSHDPA ALYGEGMWQQ 60 MTMSGSGAMQ PGPYPERSGE PDCTYYLRTG LCRFGMSCRF NHPQDRNLAI ASARMKGEYP 120 ERMGQPECQY YLKTGTCKFG PTCKFHHPRE KAGIAGRVQL NTLGYPLRPS EKECAYYLKT 180 GQCKYGNTCK FHHPELFNAM ASSRGSPIYP SVHSSATAGP PSYTGTMASW AFPRGSFIPS 240 PRWQNPSNYA PMIVPQGLVQ VPSWNSYTGQ MMPVSSSESR LQSPGAQQTY GTSQQVDASA 300 GNQGMLSPYR SSSYPVPQYA LQRENVFPER PDQPECQYYM KTGDCKFGAV CKFHHPRVRS 360 MPTPDCVLSP VGLPLRPGEE LCKFYSRYGI CKFGANCKFD HPTMAPPMGV YAYGSASTNV 420 PMVRRLLQSP SASAYTS

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MDDAGRASAP AVVTVTASAA APTPPPPPPP PPSQLPATAA ATDEPSHDPA ALYGEGMWQQ  60
MTMSGSGAMQ PGPYPERSGE PDCTYYLRTG LCRFGMSCRF NHPQDRNLAI ASARMKGEYP  120
ERMGQPECQY YLKTGTCKFG PTCKFHHPRE KAGIAGRVQL NTLGYPLRPS EKECAYYLKT  180
GQCKYGNTCK FHHPELFNAM ASSRGSPIYP SVHSSATAGP PSYTGTMASW AFPRGSFIPS  240
PRWQNPSNYA PMIVPQGLVQ VPSWNSYTGQ MMPVSSSESR LQSPGAQQTY GTSQQVDASA  300
GNQGMLSPYR SSSYPVPQYA LQRENVFPER PDQPECQYYM KTGDCKFGAV CKFHHPRVRS  360
MPTPDCVLSP VGLPLRPGEE LCKFYSRYGI CKFGANCKFD HPTMAPPMGV YAYGSASTNV  420
PMVRRLLQSP SASAYTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-147	C3H family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G46010.1