PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G45030.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 270aa    MW: 29735 Da    PI: 8.009
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G45030.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.63.8e-852269103374
             GRAS 103 leavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                      lea+ege+ vH++D++++     G QW  Ll+ La+R++g+p ++R+Tgvg+    + ++++++g+ L+ +Ae lg+ +ef+  + + le+l++
  OGLUM01G45030.1   2 LEAFEGESNVHVVDLGMTlgldRGHQWRGLLDGLAARASGKPaRVRVTGVGA----RMDTMRAIGRELQAYAEGLGMYLEFRG-INRGLESLHI 90 
                      8*************98762222567*************77666*********....9**************************.799******* PP

             GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                      ++L v+ +Ea+a+n+vl+lh++++es    +   +vL+++++lsP+ +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr +  r+ v
  OGLUM01G45030.1  91 DDLGVDADEAVAINSVLELHSVVKESRGALN---SVLQTIRKLSPRAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDARRARV 181
                      ***********************88877777...8*********************************************************** PP

             GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      E++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF++vp++    ++a+  l + + + gy+v ee+g+lvlgWk++p++++S+W+
  OGLUM01G45030.1 182 EQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSVPIKMA--AKAREWLDENAgGGGYTVAEEKGCLVLGWKGKPVIAASCWK 269
                      ********************************************754..467777777776999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MLEAFEGESN VHVVDLGMTL GLDRGHQWRG LLDGLAARAS GKPARVRVTG VGARMDTMRA  60
IGRELQAYAE GLGMYLEFRG INRGLESLHI DDLGVDADEA VAINSVLELH SVVKESRGAL  120
NSVLQTIRKL SPRAFVLVEQ DAGHNGPFFL GRFMEALHYY AALFDALDAA LPRYDARRAR  180
VEQFHFGAEI RNVVGCEGAA RVERHERADQ WRRRMSRAGF QSVPIKMAAK AREWLDENAG  240
GGGYTVAEEK GCLVLGWKGK PVIAASCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-50GRAS family protein