PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G40780.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 578aa MW: 62886.7 Da PI: 8.6059 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 67 | 98 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEde l +av+ + g++Wk+I ++ + OGLUM01G40780.2 67 KGGWTPEEDETLRKAVEAYKGRNWKKIEQRYN 98 688************************99876 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.2e-14 | 114 | 153 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed++++d+vk++G+ W+ Ia+ ++ gR +kqc++rw+++l OGLUM01G40780.2 114 EDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 153 9************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 60.4 | 4e-19 | 159 | 202 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ OGLUM01G40780.2 159 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 202 679*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence |
MGAMAMVEQE GCVENRQPLA ASSSSVSDGS SYGGGGGGLA QMSPPVSSSA NSISGLRRTS 60 GPIRRAKGGW TPEEDETLRK AVEAYKGRNW KKIEQRYNAC IDGKRFLILN LSKEDDQIID 120 LVKKYGPTKW SVIAKALPGR IGKQCRERWH NHLNPEIRKD AWTTEEEQAL INAHRIYGNK 180 WAEIAKVLPG RTDNSIKNHW NSSLRKKQDM YNTSNNLVVP KLLVHDKFKD KPKLMAMEGH 240 LDLNKAPIIN SKDQPGTAHR SNCSGFLSRS SLPTAQPLTS REASVVDGSA VTLVAQGLES 300 DSVRGKGLEI DSVHEKGLEV NSAPDHTGNS WTIQLEAAPS KGEAELSLKN EARSLGPLCY 360 QIPNMEDVVP VSSSLFSDHL TGNHTSEHCG DDILSPAGCT TPPPTKGKLT SQLSVDSILK 420 SAANSFPGTP SILKRRKRDK STPVSASEMK ISGSNTDRFY TPMGMEPATA TPESFKTTSF 480 LSLGSLDGSV KSFDVSPQYR ARSKRMALTK TVEKQLDFSS DGLDTCGSEI LNSSCNNSQS 540 TLSITEAPKL KEKEHAEHAV QLENLTKNFA HTTNLDVT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 435 | 440 | RRKRDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 5e-79 | MYB family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G40780.2 |