PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OGLUM01G38820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 429aa MW: 46607.1 Da PI: 8.8801 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.4 | 4.8e-10 | 77 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s ykGV +++ +g+++A+++d +n rkr + g ++t+e Aa+ ++ a++k++g OGLUM01G38820.1 77 SIYKGVARHRGSGKYEAHLWDkQGWNPnqTRKRGRQGAYDTEEAAARTYDLAALKIWG 134 57*******************555533445599999*******************987 PP | |||||||
2 | AP2 | 50.5 | 5.1e-16 | 177 | 228 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV ++ +grW+A+I + g +k+ +lg+f+t eeAa a++ a+ +l+g OGLUM01G38820.1 177 SKYRGVAKHHHNGRWEARIGRaV---G-KKYLYLGTFDTQEEAATAYDLAAIQLRG 228 89****************99966...2.6*************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 429 aa Download sequence |
MVSMRKKKKA FAVAAATTLL SPPRSSSSSS STASSCIVPP RTESGKKKSK HRKRAKDGTG 60 GDDDAAAVAA APRKGSSIYK GVARHRGSGK YEAHLWDKQG WNPNQTRKRG RQGAYDTEEA 120 AARTYDLAAL KIWGSDHVLN FPIDTYRKEL ERMQRMTREE YLATLRRKSS GFSRGVSKYR 180 GVAKHHHNGR WEARIGRAVG KKYLYLGTFD TQEEAATAYD LAAIQLRGRS AVTNFDASCY 240 TYTDHLPPPP PPPPPQPPSV CKTEPELEPP QPAAPPGSES LLRPKMEPCD DWEPPAICPS 300 LRDADDADHA IAEILPALCM DRADFEARYP ARRARDAAAD GWSTSSDDVA AASVDDDVLR 360 SLPDDVGFVD DVESLFLDAP GPAAAAAAAA MPDDVERAVQ RAPSAASRRA NAAAVSYAIN 420 SLASGRWWY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-75 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OGLUM01G38820.1 |