PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM01G34020.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 254aa MW: 27768.2 Da PI: 6.9031

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G34020.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.5	1.2e-32	175	233	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ OGLUM01G34020.1 175 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 233 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MENLQLQGDD HDDEALPHFP YFAVPSPPPL AVAPAASATT SDGHQHGPLE VLEQPPCSNN 60 LHPDGLVDGP QLAATTAVPM MLPAMTSLDW QSLLQTCLQA PPPVLEQQQP AAAAQADQYS 120 GENDHGDLQA AESSGAGNKE KQVMAKGGAG RPSGTKKKAS RPRFAFQTRS DNDILDDGYR 180 WRKYGQKAVK NSKHPRSYYR CTHHTCNVKK QVQRLAKDTS IVVTTYEGVH NHPCEKLMEA 240 LTPILKQLQF LSQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	2e-57	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G34020.1