PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G33070.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 349aa MW: 38780.4 Da PI: 7.3026

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G33070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.2	1.4e-10	98	194	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyfd 83 +W++ + aL++a ++ r +r++l++ W evs+ ++ + s +qC+++++ l+k+y+k+ke+++ + +s s++ yfd OGLUM01G33070.1 98 EWSEGSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSEQQCRNRIDTLRKKYRKEKERMRLAArrpdrpdRPSPSKWIYFD 191 5********************************9997776444455799*****************998653111111134567888888 PP trihelix 84 qle 86 +++ OGLUM01G33070.1 192 KMQ 194 886 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGVTCPQTRR PIHLAEPPLS PEPNPSSPLM DDGAAPAAAA AAEFPSPSPS SSGASPSPLS 60 KRRRTDRYAQ GFEFAPRPAP ATATATAPAP TPARGTPEWS EGSTFALLDA WGDRFVRAGR 120 RSLRADEWLE VSRLAAAAAS RPPGYYSEQQ CRNRIDTLRK KYRKEKERMR LAARRPDRPD 180 RPSPSKWIYF DKMQSLMCPP PLPLQPPVVT RRRDTQPVPR QSWGLDAAEY VLGGCENAGT 240 RDSGSGAELG EEQPNEAGAG KGEDFELLVE SIRKLGDVYE RVESSKRQHM AEVERLRRDL 300 QRDLEVRRRE ILEKAQAEIA RLTEEDGEEG DLKEGEGDDN KRSLDFRLI

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGVTCPQTRR PIHLAEPPLS PEPNPSSPLM DDGAAPAAAA AAEFPSPSPS SSGASPSPLS  60
KRRRTDRYAQ GFEFAPRPAP ATATATAPAP TPARGTPEWS EGSTFALLDA WGDRFVRAGR  120
RSLRADEWLE VSRLAAAAAS RPPGYYSEQQ CRNRIDTLRK KYRKEKERMR LAARRPDRPD  180
RPSPSKWIYF DKMQSLMCPP PLPLQPPVVT RRRDTQPVPR QSWGLDAAEY VLGGCENAGT  240
RDSGSGAELG EEQPNEAGAG KGEDFELLVE SIRKLGDVYE RVESSKRQHM AEVERLRRDL  300
QRDLEVRRRE ILEKAQAEIA RLTEEDGEEG DLKEGEGDDN KRSLDFRLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	298	KRQHMAEVERLRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-16	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G33070.1