PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM01G29520.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 532aa MW: 55038.7 Da PI: 8.5495

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G29520.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.9	4.2e-33	322	379	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+ OGLUM01G29520.1 322 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 379 8********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MGGEPRARAE AAWAAALPAA LVALLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP 60 PASAAVSSRS DGTGQMAAGV TLACAAPPPL RAPRASEGGR RRGVVKGGAG TDTCRSAATA 120 RERGCVRARA KNHEHGQRRR EAAVDPAMSG EYQFQDELAP LFARPGGGAG EMQMLPSSWF 180 ADYLQAGTPM QMDYDLMCRA LELPVGEDVK REVGVVDVVA AGGGGAPPLT PNTTSSMSTS 240 SSEGVGGGGG GGAGAGAGEE ESPARCKKEE DENKEEGKGE EDEGHKNKKG SAAKGGKAGK 300 GEKRARQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER 360 SYQDPAVVIT TYEGKHTHPI PATLRGSTHL LAAHAQAAAA AAAAHQLHHH HGHHGHHGMA 420 PPLPLGSGAA EQFGRSSGID VLSSFLPRAA AAHHGMTTMG GAAATTTTSH GLNSAISGGG 480 GVSSATTSAV TVAASAQPSS PAALQMQHFM AQDLGLLQDM LLPSFIHGTN QP

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MGGEPRARAE AAWAAALPAA LVALLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP  60
PASAAVSSRS DGTGQMAAGV TLACAAPPPL RAPRASEGGR RRGVVKGGAG TDTCRSAATA  120
RERGCVRARA KNHEHGQRRR EAAVDPAMSG EYQFQDELAP LFARPGGGAG EMQMLPSSWF  180
ADYLQAGTPM QMDYDLMCRA LELPVGEDVK REVGVVDVVA AGGGGAPPLT PNTTSSMSTS  240
SSEGVGGGGG GGAGAGAGEE ESPARCKKEE DENKEEGKGE EDEGHKNKKG SAAKGGKAGK  300
GEKRARQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ KCPVKKRVER  360
SYQDPAVVIT TYEGKHTHPI PATLRGSTHL LAAHAQAAAA AAAAHQLHHH HGHHGHHGMA  420
PPLPLGSGAA EQFGRSSGID VLSSFLPRAA AAHHGMTTMG GAAATTTTSH GLNSAISGGG  480
GVSSATTSAV TVAASAQPSS PAALQMQHFM AQDLGLLQDM LLPSFIHGTN QP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	5e-48	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G29520.1