PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G23970.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 327aa MW: 36047 Da PI: 5.2882

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G23970.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.4e-14	173	220	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f +L++l+P+ + K++Ka+iL +++ Y+k+L+ OGLUM01G23970.1 173 KNHVMSERRRREKLNEMFLTLKSLVPSiD------KVDKASILAETIAYLKELE 220 5899*********************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MKKLRLSVSE EPNVVNRITT AFWEFQLLAC SDEPISSGTP SSPSSPLTKE TGDANTVLID 60 DLFLVHSDAI PAGGDLQEDH QLGDDLGQQQ AATAMEIDDD VLIRNWDNDS SSSWIELLDH 120 VVVSPASCFV PWKRTDLDKE AVAAGGEAAQ RLLKKAVGGG GAWMNRAAGS SIKNHVMSER 180 RRREKLNEMF LTLKSLVPSI DKVDKASILA ETIAYLKELE RRVQELESGK KVSRPAKRKP 240 CSETIIGGGD AGAVKEHHHW VLSESQEGTP SDVRVIVMDK DELHLEVHCR WKELMMTRLF 300 DAIKSLRLDV LSVQALAPNG LLGICYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	184	ERRRRE
2	180	185	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.1	7e-27	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G23970.1