PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G22380.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 360aa    MW: 38860.1 Da    PI: 5.9726
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G22380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l + + ++G g+W+++++  g+ R++k+c++rw +yl
  OGLUM01G22380.1 17 RGLWSPEEDEKLFNHISRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 64
                     788*******************************************97 PP
2Myb_DNA-binding51.52.3e-1670113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el++ ++k lG++ W+ Ia+ ++ gRt++++k++w++
  OGLUM01G22380.1  70 RGSFSQQEEELIISLHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 113
                      899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MGRESAAACS PKPKLRRGLW SPEEDEKLFN HISRYGVGCW SSVPKLAGLE RCGKSCRLRW  60
INYLRPDLKR GSFSQQEEEL IISLHKILGN RWSQIASQLP GRTDNEIKNF WNSCLKKKLR  120
QRGIDPATHK PLNDGGAGAG EEHHDDGDKQ QQQQLMDDVD DCFAIGGGGS SDSLAPPHSP  180
AVSFDPLSVT NVPTTMMQSS SSPYGAAGGE HSSFRSDTLC DYGGSGGGVD VVSDAGTYSA  240
YTGDSSSNSN STAWTCGSVV VGGAGELPPP PLLPHMDMFG RVDAEPPPYP PFDVPARFSP  300
WHHHHHHHQE PTLPTPPQRL DGGGGAAASF PIRSLSRDMP ESCFDLGRGA LDDEFGVDFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKKKLRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.13e-75MYB family protein