PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G20920.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 553aa MW: 59960.7 Da PI: 4.8859

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G20920.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l OGLUM01G20920.3 42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 89 79******************************************9986 PP
2	Myb_DNA-binding	51	3.4e-16	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++ ++G++ W++ a++++ gRt++++k++w++ OGLUM01G20920.3 95 KGAFTAEEERLIIQLHSKMGNK-WARMAAHLP-GRTDNEIKNYWNT 138 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MYRVKSESDC EMIHQEQMDS PVADDGSSGG SPHRGGGPPL KKGPWTSAED AILVDYVKKH 60 GEGNWNAVQK NTGLFRCGKS CRLRWANHLR PNLKKGAFTA EEERLIIQLH SKMGNKWARM 120 AAHLPGRTDN EIKNYWNTRI KRCQRAGLPI YPTSVCNQSS NEDQQCSSDF DCGENLSNDL 180 LNANGLYLPD FTCDNFIANS EALPYAPHLS AVSISNLLGQ SFASKSCSFM DQVNQTGMLK 240 QSDGVLPGLS DTINGVISSV DQFSNDSEKL KQAVGFDYLH EANSSSKIIA PFGGALNGSH 300 AFLNGNFSAS RPTSGPLKME LPSLQDTESD PNSWLKYTVA PALQPTELVD PYLQSPAATP 360 SVKSECASPR NSGLLEELIH EAQTLRSGKN QQTSVISSSS SVGTPCNTTV LSPEFDMCQE 420 YWEEQHPGPF LNDCAPFSGN SFTESTPPVS AASPDIFQLS KVSPAQSTSM GSGEQVMGPK 480 YEPGDTSPHP ENFRPDALFS GNTADPSVFN NAIAMLLGND LSIDCRPVLG DGIMFNSSSW 540 SNMPHACEMS EFK

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MYRVKSESDC EMIHQEQMDS PVADDGSSGG SPHRGGGPPL KKGPWTSAED AILVDYVKKH  60
GEGNWNAVQK NTGLFRCGKS CRLRWANHLR PNLKKGAFTA EEERLIIQLH SKMGNKWARM  120
AAHLPGRTDN EIKNYWNTRI KRCQRAGLPI YPTSVCNQSS NEDQQCSSDF DCGENLSNDL  180
LNANGLYLPD FTCDNFIANS EALPYAPHLS AVSISNLLGQ SFASKSCSFM DQVNQTGMLK  240
QSDGVLPGLS DTINGVISSV DQFSNDSEKL KQAVGFDYLH EANSSSKIIA PFGGALNGSH  300
AFLNGNFSAS RPTSGPLKME LPSLQDTESD PNSWLKYTVA PALQPTELVD PYLQSPAATP  360
SVKSECASPR NSGLLEELIH EAQTLRSGKN QQTSVISSSS SVGTPCNTTV LSPEFDMCQE  420
YWEEQHPGPF LNDCAPFSGN SFTESTPPVS AASPDIFQLS KVSPAQSTSM GSGEQVMGPK  480
YEPGDTSPHP ENFRPDALFS GNTADPSVFN NAIAMLLGND LSIDCRPVLG DGIMFNSSSW  540
SNMPHACEMS EFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	5e-88	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G20920.3