PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G09830.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 785aa MW: 84938.6 Da PI: 10.0753

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G09830.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.6e-12	631	677	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq OGLUM01G09830.1 631 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 677 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MNKPPARKAE KSPWVGDRAG SPAPSEPRTG SARLGSGSNP TGVEKAKAPS FSFHTSPPLF 60 FSLSTSQVAS LLRPRNPLTN QRNLRHHHHH HHRLLRARRI RGTLALAWGV GGGRSGRRRR 120 RGGGCSDSAS GGWGGPPLSS WGGAEETPPV LDSVAAAPIR AREPQHGIMV MKMEADEDGA 180 NGGTGGTWTD EDRALTASVL GTDAFAYLTK GGGAISEGLV AASLPVDLQN RLQELVESDR 240 PGAGWNYAIF WQLSRTKSGD LVLGWGDGSC REPRDGEMGP AASAGSDEAK QRMRKRVLQR 300 LHSAFGGVDE EDYAPGIDQV TDTEMFFLAS MYFAFPRRAG GPGQVFAAGV PLWIPNTERN 360 VFPANYCYRG YLANAAGFRT IVLVPFETGV LELGSMQQVA ESSDTLQTIR SVFAGAIGNK 420 AGVQRHEGSG PTDKSPGLAK IFGKDLNLGR PSAGPGTGMS KADERSWEQR TGGGSSLLPN 480 VQRGLQNFTW SQARGLNSHQ QKFGNGILIV SNEATPRNNG VVDSSTATQF QLQKAPPLQK 540 LPQLQKSHQL VKPQQLVSQQ QLQPQAPRQI DFSAGTSSKP GVLTKKPAGI DGDGAEVDGL 600 CKDEGPPPAL EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM 660 DKASLLGDAI TYITDLQKKL KEMEVERERL IESGMIDPRD RTPRPEVDIQ VVQDEVLVRV 720 MSPMESHPVR AIFQAFEEAE VHAGESKITS NNGTAVHSFI IKCPGAEQQT REKVIAAMSR 780 VMNSG

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MNKPPARKAE KSPWVGDRAG SPAPSEPRTG SARLGSGSNP TGVEKAKAPS FSFHTSPPLF  60
FSLSTSQVAS LLRPRNPLTN QRNLRHHHHH HHRLLRARRI RGTLALAWGV GGGRSGRRRR  120
RGGGCSDSAS GGWGGPPLSS WGGAEETPPV LDSVAAAPIR AREPQHGIMV MKMEADEDGA  180
NGGTGGTWTD EDRALTASVL GTDAFAYLTK GGGAISEGLV AASLPVDLQN RLQELVESDR  240
PGAGWNYAIF WQLSRTKSGD LVLGWGDGSC REPRDGEMGP AASAGSDEAK QRMRKRVLQR  300
LHSAFGGVDE EDYAPGIDQV TDTEMFFLAS MYFAFPRRAG GPGQVFAAGV PLWIPNTERN  360
VFPANYCYRG YLANAAGFRT IVLVPFETGV LELGSMQQVA ESSDTLQTIR SVFAGAIGNK  420
AGVQRHEGSG PTDKSPGLAK IFGKDLNLGR PSAGPGTGMS KADERSWEQR TGGGSSLLPN  480
VQRGLQNFTW SQARGLNSHQ QKFGNGILIV SNEATPRNNG VVDSSTATQF QLQKAPPLQK  540
LPQLQKSHQL VKPQQLVSQQ QLQPQAPRQI DFSAGTSSKP GVLTKKPAGI DGDGAEVDGL  600
CKDEGPPPAL EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  660
DKASLLGDAI TYITDLQKKL KEMEVERERL IESGMIDPRD RTPRPEVDIQ VVQDEVLVRV  720
MSPMESHPVR AIFQAFEEAE VHAGESKITS NNGTAVHSFI IKCPGAEQQT REKVIAAMSR  780
VMNSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	613	621	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-70	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G09830.1