PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G09290.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 970aa MW: 106623 Da PI: 4.945

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G09290.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.5e-12	44	79	12	48
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 l++av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l OGLUM01G09290.2 44 LKRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 79 789****************.**********986 PP
2	Myb_DNA-binding	62.4	9.4e-20	85	131	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l OGLUM01G09290.2 85 KGPWSKEEDEIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 131 79****************************.***********97 PP
3	Myb_DNA-binding	48.5	1.9e-15	137	179	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ OGLUM01G09290.2 137 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 179 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 970 aa Download sequence
MESLLDLRRL LKKEKSAMNQ KGDDLSMGGP PVRHGVPPKE IGPLKRAVQT YNGKNWKKIA 60 ECFPDRTDVQ CLHRWQKVLN PELVKGPWSK EEDEIIVQMV NKLGPKKWST IAQALPGRIG 120 KQCRERWYNH LNPGINKEAW TQEEEITLIH AHRMYGNKWA ELTKFLPGRT DNSIKNHWNS 180 SVKKKVNSYM SSGLLTQVSC LPLNEYSANC NSSPAMTQQN SEDSGCFAVR EVENSSGCSQ 240 SSLAKVSCSQ VHDTTVPLGC DLQVNANFDK NEAHDSQSSM GPQACYTSAE AVASALPAVH 300 CHVSSSNLDP DQHLQEDFAQ GLNLDMTIDE MPTVPSFADN QTVCSIENHE RSLEPYDVAM 360 EVPLSMLSSD SGAEQKLHFM SEADFNSPNC LKSELWQDIS LQGLLSGPDA VEADSFSRSN 420 HQSDVYSSEA DTHFLAPPYM PQTSNSSSVM GLADDQSPQM SVPPSLICSN AMTDDAPFDN 480 RPGRKEMPLS QAEVVTQSSS SSGDAEMFAN PGCSNDRHVP SSTMESIPEC GDQQVTNAEE 540 PEASLEKEPS LTQSVTAPDE QDKGALFYEP PRFPSLDVPF VSCDLVTSGD LQEFSPLGIR 600 QLMHSTMNVC TPMRLWGSPT HDESTGVLLK SAAKSFICTP SILKKRHRDL LSPIPDKRIE 660 KKYGTEKDRG VSDTSSTGIQ TSCINATKDD ALITTVLRIE RSASSKSLEK KLVFSDENKE 720 NLGYTTEQTK DGQSAGNDEH MDEQTTGERS SATNVATNDD LSGNLQPAGI LIEHSGDDPI 780 SPDYGKNTMN QKLNTNVKSL SVCKEGVCAK SKPTELIVEK SSPCINVDYE YVNILADTPG 840 IKRGLESPSA WKSPWFVDMH FQGSYFTSPA DSYDALGLMK QINVQTAAAL VEAREVLASG 900 GQCDNISSDK ENTGNPDAKK EPGTTKLQTK IMSPGFRVYH TCKIIRQKFW QQSGKISELT 960 YSFVPSPEKF

Sequence ? help Back to Top

Protein Sequence Length: 970 aa Download sequence

MESLLDLRRL LKKEKSAMNQ KGDDLSMGGP PVRHGVPPKE IGPLKRAVQT YNGKNWKKIA  60
ECFPDRTDVQ CLHRWQKVLN PELVKGPWSK EEDEIIVQMV NKLGPKKWST IAQALPGRIG  120
KQCRERWYNH LNPGINKEAW TQEEEITLIH AHRMYGNKWA ELTKFLPGRT DNSIKNHWNS  180
SVKKKVNSYM SSGLLTQVSC LPLNEYSANC NSSPAMTQQN SEDSGCFAVR EVENSSGCSQ  240
SSLAKVSCSQ VHDTTVPLGC DLQVNANFDK NEAHDSQSSM GPQACYTSAE AVASALPAVH  300
CHVSSSNLDP DQHLQEDFAQ GLNLDMTIDE MPTVPSFADN QTVCSIENHE RSLEPYDVAM  360
EVPLSMLSSD SGAEQKLHFM SEADFNSPNC LKSELWQDIS LQGLLSGPDA VEADSFSRSN  420
HQSDVYSSEA DTHFLAPPYM PQTSNSSSVM GLADDQSPQM SVPPSLICSN AMTDDAPFDN  480
RPGRKEMPLS QAEVVTQSSS SSGDAEMFAN PGCSNDRHVP SSTMESIPEC GDQQVTNAEE  540
PEASLEKEPS LTQSVTAPDE QDKGALFYEP PRFPSLDVPF VSCDLVTSGD LQEFSPLGIR  600
QLMHSTMNVC TPMRLWGSPT HDESTGVLLK SAAKSFICTP SILKKRHRDL LSPIPDKRIE  660
KKYGTEKDRG VSDTSSTGIQ TSCINATKDD ALITTVLRIE RSASSKSLEK KLVFSDENKE  720
NLGYTTEQTK DGQSAGNDEH MDEQTTGERS SATNVATNDD LSGNLQPAGI LIEHSGDDPI  780
SPDYGKNTMN QKLNTNVKSL SVCKEGVCAK SKPTELIVEK SSPCINVDYE YVNILADTPG  840
IKRGLESPSA WKSPWFVDMH FQGSYFTSPA DSYDALGLMK QINVQTAAAL VEAREVLASG  900
GQCDNISSDK ENTGNPDAKK EPGTTKLQTK IMSPGFRVYH TCKIIRQKFW QQSGKISELT  960
YSFVPSPEKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	1e-119	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G09290.2