PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G08450.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 267aa MW: 27314.8 Da PI: 8.9519

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G08450.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.5e-13	80	126	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+++P K++Ka+ L ++v ++k+L OGLUM01G08450.1 80 KSHSEAERRRRERINAHLATLRTMVPCT-----DKMDKAALLAEVVGHVKKL 126 58***********************7.....6************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MGSAPFGDAV AGGGLYEYQG YHGGFAGGHG LGQPAGRAPA LDDGETEGMD ASAAAAVNAM 60 EMAKRNCGGG REEKAAMALK SHSEAERRRR ERINAHLATL RTMVPCTDKM DKAALLAEVV 120 GHVKKLKSAA ARVGRRATVP SGADEVAVDE ASATGGGGEG PLLLRATLSC DDRADLFVDV 180 KRALQPLGLE VVGSEVTTLG GRVRLAFLVS CGSRGGTAAA AMASVRHALQ SVLDKASSGF 240 DFAPRAASLL GSKRRKVSTF ESSSSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	ERRRRE
2	87	127	RRRRERINAHLATLRTMVPCTDKMDKAALLAEVVGHVKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	5e-31	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G08450.1