PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G07380.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 843aa    MW: 90989.3 Da    PI: 6.8924
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G07380.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89e-191270357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OGLUM01G07380.2 12 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpalaNVDPKQIKVWFQNRRCREKQ 70
                     6789*****************************************************97 PP
2START99.18.2e-321793502202
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTTEEEEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissggalqlmv 95 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W +++++++++             
  OGLUM01G07380.2 179 IAEETLTEFLSKATGTAVEWLQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMDVV------------- 258
                      789*******************************************************.8888888888*******88776............. PP

                      EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHH CS
            START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksg 188
                       +l+a+++l+p Rdf+ +R+ +   +            +++p   ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s+
  OGLUM01G07380.2 259 -NLYAPTTLAPaRDFWLLRSKQG--G------------PSMPL-VQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESS 336
                      .799***************9666..3............44444.4569********************************************** PP

                      HHHHHHHHHHHTXX CS
            START 189 laegaktwvatlqr 202
                      ++ ++k+ +a ++ 
  OGLUM01G07380.2 337 AMVAQKISMALCKI 350
                      *********99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MVASAAAMDA SKYVRYTPEQ VEALERLYYE CPKPSSLRRQ QLVRECPALA NVDPKQIKVW  60
FQNRRCREKQ RKESSRLQAL NRKLTAMNKL LMEENDRLQK QVSQLVYDHG RHGVAAAGRM  120
RRVPAFPPQA AAPAGHQLAT ATDTSCESVV TSGHHHQQQQ HNVVQPPPRD ASPAGLMSIA  180
EETLTEFLSK ATGTAVEWLQ MPGMKPGPDS IGIIAISHGC AGVAARACGL VGMEPAKVAE  240
ILKDRPLWLR DCRSMDVVNL YAPTTLAPAR DFWLLRSKQG GPSMPLVQPF IRGEMLPSGF  300
LIRPSDGGGS VIHIVDHMDL EPWSVPEVVR PLYESSAMVA QKISMALCKI QALRYLRQVA  360
HEDTRSVITG WGRQPAALRA LSQKLTRGFN ETLNGLADDG WSVIESDGVD DVCISVNSSK  420
VIGCNATFSS GLPIVSTGVL CAKASMLLQD VSPPSLLQFL REHRSQWADS NLDAFFASAM  480
KPNFCNLPMS RLGGFSGQVI LPLAHTFEPE EFLEVIKLGN ASNYQDTLVH RDLFLLQMYN  540
GVEESSAGTC SELIFAPIDA SFSDDSPLLP SGFRIIPIDS PLDTSSPNCT LDLASTLEAA  600
TPRSRISGVN GGGGGGCAAA AASSKAVMTI AFQFAFDGHL QDSVAAMARQ YMRSIISSVQ  660
RIAVALSSSR LVPPAGAGGG AAPQLAPANP EAATLPRWIC QSFRFHFGAE LIKSVDANSS  720
SESILKAVWH HPSAILCCSL KAMPVFTFAN QSGLDMLETT LVALQDMTLE KVFDDQGRKN  780
LCTELPNIME QGMACMEGGV CVSSVGRAAS YEKAVAWKVV DGDGGGGGGA HCICFMFINW  840
TFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein