PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM01G05240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 602aa MW: 66138.8 Da PI: 7.3163 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.2 | 1.1e-06 | 56 | 81 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C +f +G C + d C+FaHg OGLUM01G05240.1 56 YKTRVCETFVTSGRCMFEDGCTFAHG 81 9************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence |
MAGRGGMEWE VGRRRDSEDV IVLSPGPPAR RRPPPVKAVE PDSGGFAYEP PEKLFYKTRV 60 CETFVTSGRC MFEDGCTFAH GDEELRPSLT ACAGGWRKPS PSLAAPPVAV AVAPTPPPAQ 120 VVHELLARGS GSGGGHRAIT KVCFEFRDKG TCYFGETCAF PHVSAAEIRQ GSRLSSMSSS 180 SWEMPARRSV AVTVPRTFVS VPPVAPPPPH YRVNNNSSSS SGYNAASMAA AAPPAASDAN 240 LVAQQQPPEQ GGRKMTRLEM LSLKKMTGIY GDWLEGAIEH YLNAGVVSIK LWMNRFDYRG 300 LMQPFDGICE IPIIKLRPYQ LNYYNQEAVG KGQHRWGKWF DLSIAQEKLV NSTGGSTASS 360 SHLVYPSKSK RLSWHPRIFL YEGFLSDMEC DHLVSTGRGN MESSLAFTDG DRNSSYNNIE 420 DIVVSKIEDR ISLWSFLPKE NGENIQVLKY GVNRRGSIKE EPKSSTGGHW LATILIYLSD 480 VKQGGETVFP RSEMKDAQAK EGAPSQCSGY AVRPAKGNAI LLFNLRPDGE IDKDSQYEEC 540 PVLEGEKWLA IKHIHLRKLD SPKSSLASED ECTDEDDRCV SWAASGLSNL ILSAYNHEKI 600 IT |
Link Out ? help Back to Top | |
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Ensembl | OGLUM01G05240.1 |