PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM01G01950.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 444aa MW: 47720.7 Da PI: 7.5763

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM01G01950.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.9e-17	391	434	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eEdell++++++lG++ W++Ia +++ gRt+k++ ++w++ OGLUM01G01950.2 391 RRSFSKEEDELLLKLHALLGNR-WSLIAGRLP-GRTDKEVMNHWNS 434 6789****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MALHLTRPFL RPSPPSPPPP RPTRRSSRAH CLAPSASARG PSFRRPYTSV LVVPTGVGAA 60 VGGFAGDALP VARALGAVAD CVISHPNVLN AAMLYWPMPN TLYVEGYALD RFAEGSWALQ 120 PVHQNKVGLV LDSGIEEELR LRHLQVADAA RASLGLPVVE YIVTDTPLEI KTWFDPKCGK 180 STGSVGNSDS LLRAVEALVN RSDVNAVAVV ARFPDDDPED SDCYREGKGV DLLAGVEAII 240 SHLIVKKFKI PAAHAPAVLP PVLSLSVSPR SAAEEIGHTF LPCVLAGLSN APQYVMRRNG 300 NMDNGCIVAS DVDSVILPKD ACGGDGTIAF ARTATKNKPL IITVQENETV LDDTPDKFNI 360 EAVSSQPPPR LISEHLPAGD PPSPLSRSRK RRSFSKEEDE LLLKLHALLG NRWSLIAGRL 420 PGRTDKEVMN HWNSKLMDTS TLAK

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MALHLTRPFL RPSPPSPPPP RPTRRSSRAH CLAPSASARG PSFRRPYTSV LVVPTGVGAA  60
VGGFAGDALP VARALGAVAD CVISHPNVLN AAMLYWPMPN TLYVEGYALD RFAEGSWALQ  120
PVHQNKVGLV LDSGIEEELR LRHLQVADAA RASLGLPVVE YIVTDTPLEI KTWFDPKCGK  180
STGSVGNSDS LLRAVEALVN RSDVNAVAVV ARFPDDDPED SDCYREGKGV DLLAGVEAII  240
SHLIVKKFKI PAAHAPAVLP PVLSLSVSPR SAAEEIGHTF LPCVLAGLSN APQYVMRRNG  300
NMDNGCIVAS DVDSVILPKD ACGGDGTIAF ARTATKNKPL IITVQENETV LDDTPDKFNI  360
EAVSSQPPPR LISEHLPAGD PPSPLSRSRK RRSFSKEEDE LLLKLHALLG NRWSLIAGRL  420
PGRTDKEVMN HWNSKLMDTS TLAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	388	393	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	5e-10	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM01G01950.2