PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM01G00830.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 291aa    MW: 30274 Da    PI: 7.834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM01G00830.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09208251755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  OGLUM01G00830.1 208 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 251
                      67799*****************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MMAAQASSKR GMLLPREAVL YDDEPSMPLE ILGYHGNGVG GGGCVDADYY YSWSGSSSSS  60
SSSVLSFDQA AVGGGGGGCA RQLAFHPGGD DDDCAMWMDA AAGAMVENTS VVAGGGNNYC  120
HRLQFHGGAA GFGLASPGSS VVDNGLEIHE SNVSKPPPPA AKKRACPSGE ARAAGKKQCR  180
KGSKPNKAAS ASSPSPSPSP NKEQPQSAAA KVRRERISER LKVLQDLVPN GTKVDLVTML  240
EKAINYVKFL QLQVKVLATD EFWPAQGGKA PELSQVKDAL DAILSSQHPN K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-46bHLH family protein